Variant report

Variant	rs1846849
Chromosome Location	chr3:157010573-157010574
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:157005885..157009539-chr3:157009923..157012607,4	K562	blood:
2	chr3:157008081..157011337-chr3:157013720..157016384,3	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10513504	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs10513511	1.00[CHB][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs10513513	0.85[CHB][hapmap];0.92[JPT][hapmap]
rs11918443	0.86[CHB][hapmap]
rs11926562	0.85[CHB][hapmap]
rs16827507	1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs16827579	0.86[CHB][hapmap]
rs17386666	0.92[AFR][1000 genomes]
rs17387112	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17388582	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17454198	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60379417	0.95[ASN][1000 genomes]
rs60626378	0.95[ASN][1000 genomes]
rs6795007	1.00[CHB][hapmap];0.92[JPT][hapmap];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6795781	0.97[ASN][1000 genomes]
rs73156737	0.92[ASN][1000 genomes]
rs73156754	0.85[ASN][1000 genomes]
rs73873630	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7430655	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7643492	1.00[CHB][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs950418	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157000600-157015400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:157003600-157011800	Weak transcription	Fetal Lung	lung
3	chr3:157004800-157028200	Weak transcription	HUVEC	blood vessel
4	chr3:157005600-157015000	Enhancers	Muscle Satellite Cultured Cells	--
5	chr3:157006000-157011800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr3:157007600-157012200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr3:157009000-157012200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr3:157009000-157012400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:157009200-157012000	Weak transcription	HSMMtube	muscle
10	chr3:157009200-157012200	Weak transcription	NH-A	brain
11	chr3:157009400-157011200	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr3:157009600-157010800	Weak transcription	Osteobl	bone
13	chr3:157009600-157011000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr3:157009600-157011000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr3:157010000-157012200	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr3:157010200-157012000	Weak transcription	NHLF	lung
17	chr3:157010200-157012200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr3:157010200-157012200	Weak transcription	HSMM	muscle
19	chr3:157010400-157010800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr3:157010400-157010800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr3:157010400-157011800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr3:157010400-157012200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr3:157010400-157012200	Weak transcription	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links