Variant report

Variant	rs17388582
Chromosome Location	chr3:156998003-156998004
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156997473..157000192-chr3:157001265..157003413,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10513504	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10513511	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10513513	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs11918443	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs11926562	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs16827507	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16827579	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs17387112	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17454198	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1846849	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60379417	0.85[ASN][1000 genomes]
rs60626378	0.85[ASN][1000 genomes]
rs6795007	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6795781	0.87[ASN][1000 genomes]
rs73156737	0.82[ASN][1000 genomes]
rs73156754	0.82[ASN][1000 genomes]
rs73158505	1.00[AFR][1000 genomes]
rs73158512	1.00[AFR][1000 genomes]
rs73873630	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7430655	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7643492	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs950418	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156967200-157000000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:156967200-157000000	Weak transcription	NH-A	brain
3	chr3:156967200-157007800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:156984200-156998200	Weak transcription	HUVEC	blood vessel
5	chr3:156988000-157005800	Weak transcription	Pancreas	Pancrea
6	chr3:156989400-156999800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr3:156992600-157000200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:156994000-157000000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr3:156994200-156998800	Weak transcription	HSMM	muscle
10	chr3:156994600-156998600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:156997000-157000400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:156997000-157001000	Enhancers	Osteobl	bone
13	chr3:156997000-157004400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr3:156997400-156998400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr3:156997400-156999600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr3:156997600-157003600	Weak transcription	K562	blood
17	chr3:156997800-156999800	Enhancers	NHDF-Ad	bronchial
18	chr3:156998000-156998400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr3:156998000-156999200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr3:156998000-157000600	Enhancers	Muscle Satellite Cultured Cells	--

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