Variant report

Variant	rs60626378
Chromosome Location	chr3:157036100-157036101
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10513511	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16827507	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17388582	0.85[ASN][1000 genomes]
rs17454198	0.85[ASN][1000 genomes]
rs1846849	0.95[ASN][1000 genomes]
rs60379417	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6795007	0.95[ASN][1000 genomes]
rs6795781	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73156737	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73156754	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73873630	0.97[ASN][1000 genomes]
rs7430655	0.82[ASN][1000 genomes]
rs7643492	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs950418	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157015600-157048400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:157030400-157036200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:157030600-157047000	Weak transcription	Osteobl	bone
4	chr3:157031400-157037400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr3:157031800-157039200	Weak transcription	HUVEC	blood vessel
6	chr3:157035400-157036200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:157035400-157036800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:157035400-157036800	Enhancers	A549	lung
9	chr3:157035600-157036800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr3:157036000-157047800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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