Variant report

Variant	rs10513511
Chromosome Location	chr3:157075739-157075740
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10513504	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs10513513	1.00[CEU][hapmap];0.85[CHB][hapmap];0.94[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.85[ASN][1000 genomes]
rs11918443	1.00[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11924331	0.80[EUR][1000 genomes]
rs11926562	1.00[CEU][hapmap];0.85[CHB][hapmap];0.81[CHD][hapmap];0.85[JPT][hapmap];0.87[TSI][hapmap]
rs12632681	0.80[EUR][1000 genomes]
rs16827507	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16827579	1.00[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap];0.80[EUR][1000 genomes]
rs17387112	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs17388582	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17454198	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[ASN][1000 genomes]
rs1846849	1.00[CHB][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs60379417	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60626378	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6795007	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[ASN][1000 genomes]
rs6795781	0.85[ASN][1000 genomes]
rs73156737	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73156754	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156772	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73156774	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73156776	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73156777	0.80[EUR][1000 genomes]
rs73156778	0.80[EUR][1000 genomes]
rs73156782	0.80[EUR][1000 genomes]
rs73156784	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73158505	0.83[ASN][1000 genomes]
rs73873630	0.87[ASN][1000 genomes]
rs7430655	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7643492	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157066000-157076400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:157066000-157086800	Weak transcription	Pancreas	Pancrea
3	chr3:157066600-157076000	Weak transcription	NH-A	brain
4	chr3:157066600-157083200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr3:157070400-157077400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr3:157072400-157077200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr3:157073000-157076000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr3:157073000-157077800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:157073400-157076800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr3:157073400-157076800	Weak transcription	HSMM	muscle
11	chr3:157073400-157079800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr3:157073800-157075800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr3:157074400-157077400	Enhancers	Muscle Satellite Cultured Cells	--
14	chr3:157074600-157076400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:157074600-157076600	Weak transcription	NHLF	lung
16	chr3:157074600-157077200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr3:157074600-157077400	Enhancers	HUVEC	blood vessel
18	chr3:157074800-157076000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr3:157074800-157076600	Weak transcription	NHDF-Ad	bronchial
20	chr3:157075200-157076800	Weak transcription	A549	lung
21	chr3:157075400-157075800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr3:157075400-157076400	Weak transcription	Osteobl	bone
23	chr3:157075600-157076000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links