Variant report

Variant	rs73158505
Chromosome Location	chr3:157137953-157137954
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10513511	0.83[ASN][1000 genomes]
rs10513513	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11918443	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11924331	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11926562	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12632681	0.87[EUR][1000 genomes]
rs16827579	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17388582	1.00[AFR][1000 genomes]
rs73156754	0.83[ASN][1000 genomes]
rs73156772	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73156774	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73156776	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73156777	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73156778	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73156782	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73156784	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73156789	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73156793	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73158512	1.00[AFR][1000 genomes]
rs7629562	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757900	chr3:157090166-157254684	Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2759193	chr3:157090166-157254684	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157091800-157142600	Weak transcription	Pancreas	Pancrea
2	chr3:157119000-157142800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:157120000-157142600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr3:157127000-157141800	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr3:157128200-157138600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:157136000-157138400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:157136000-157138600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr3:157136000-157142800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr3:157136200-157138000	Weak transcription	HSMM	muscle
10	chr3:157136200-157138400	Weak transcription	Osteobl	bone
11	chr3:157136200-157140200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:157136200-157140600	Weak transcription	HSMMtube	muscle
13	chr3:157136200-157141000	Weak transcription	NH-A	brain
14	chr3:157136200-157141000	Weak transcription	NHDF-Ad	bronchial
15	chr3:157136200-157145800	Weak transcription	NHLF	lung
16	chr3:157136200-157146800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr3:157136400-157138400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr3:157136400-157140800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr3:157136400-157141000	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr3:157137000-157138000	Weak transcription	HUVEC	blood vessel

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