Variant report

Variant	rs12632681
Chromosome Location	chr3:157094682-157094683
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10513511	0.80[EUR][1000 genomes]
rs10513513	0.94[EUR][1000 genomes]
rs11918443	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11924331	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11926562	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs16827579	1.00[EUR][1000 genomes]
rs73156754	0.80[EUR][1000 genomes]
rs73156772	1.00[EUR][1000 genomes]
rs73156774	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73156776	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73156777	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73156778	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73156782	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73156784	1.00[EUR][1000 genomes]
rs73156789	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs73156793	0.94[EUR][1000 genomes]
rs73158505	0.87[EUR][1000 genomes]
rs7629562	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757900	chr3:157090166-157254684	Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2759193	chr3:157090166-157254684	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157078200-157102400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr3:157083600-157105800	Weak transcription	HSMM	muscle
3	chr3:157088000-157108600	Weak transcription	Lung	lung
4	chr3:157088600-157105400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr3:157090200-157096800	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr3:157091200-157095200	Enhancers	NHDF-Ad	bronchial
7	chr3:157091400-157095000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr3:157091400-157095000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr3:157091400-157096000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:157091600-157095000	Enhancers	NHLF	lung
11	chr3:157091600-157097200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr3:157091800-157108600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr3:157091800-157142600	Weak transcription	Pancreas	Pancrea
14	chr3:157092000-157096000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr3:157092800-157095000	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr3:157092800-157095000	Enhancers	HUVEC	blood vessel
17	chr3:157093200-157094800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr3:157093200-157095200	Enhancers	Osteobl	bone
19	chr3:157093600-157095000	Enhancers	Fetal Brain Male	brain
20	chr3:157093600-157095000	Enhancers	Fetal Lung	lung
21	chr3:157093600-157095200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr3:157093800-157095200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr3:157093800-157095400	Enhancers	Fetal Stomach	stomach
24	chr3:157094000-157094800	Enhancers	Brain Germinal Matrix	brain
25	chr3:157094000-157094800	Enhancers	Fetal Brain Female	brain
26	chr3:157094000-157095000	Enhancers	Brain Hippocampus Middle	brain
27	chr3:157094200-157106000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr3:157094200-157106000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr3:157094200-157106200	Weak transcription	NH-A	brain
30	chr3:157094600-157094800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr3:157094600-157096400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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