Variant report

Variant	rs73156793
Chromosome Location	chr3:157125285-157125286
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10513513	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11918443	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11924331	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11926562	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12632681	0.94[EUR][1000 genomes]
rs16827579	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34618451	0.88[AFR][1000 genomes]
rs73156772	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73156774	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73156776	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73156777	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73156778	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73156782	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156784	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73156789	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73158505	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7629562	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757900	chr3:157090166-157254684	Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2759193	chr3:157090166-157254684	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157091800-157142600	Weak transcription	Pancreas	Pancrea
2	chr3:157107400-157128000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:157113400-157129800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr3:157116000-157128600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:157119000-157142800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr3:157120000-157142600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr3:157120200-157135800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:157123000-157125800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr3:157123000-157126600	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr3:157123000-157135000	Weak transcription	Spleen	Spleen
11	chr3:157123600-157125800	Weak transcription	NHDF-Ad	bronchial
12	chr3:157123600-157129200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:157123800-157128600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr3:157123800-157130000	Weak transcription	NH-A	brain
15	chr3:157124400-157131200	Weak transcription	Osteobl	bone
16	chr3:157124400-157134200	Weak transcription	HSMM	muscle
17	chr3:157124400-157135800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr3:157124600-157129600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr3:157124600-157134800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr3:157125200-157125800	Genic enhancers	HUVEC	blood vessel
21	chr3:157125200-157126600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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