Variant report

Variant	rs73158512
Chromosome Location	chr3:157161906-157161907
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17388582	1.00[AFR][1000 genomes]
rs73158505	1.00[AFR][1000 genomes]
rs73158510	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757900	chr3:157090166-157254684	Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2759193	chr3:157090166-157254684	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157155200-157163400	Weak transcription	Hela-S3	cervix
2	chr3:157156400-157162600	Weak transcription	Gastric	stomach
3	chr3:157157200-157163400	Weak transcription	Brain Germinal Matrix	brain
4	chr3:157157400-157162400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr3:157157800-157162000	Weak transcription	HSMMtube	muscle
6	chr3:157158200-157164000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr3:157159000-157177400	Weak transcription	NH-A	brain
8	chr3:157159200-157163200	Weak transcription	Fetal Brain Female	brain
9	chr3:157159400-157162000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:157159800-157162200	Genic enhancers	HUVEC	blood vessel
11	chr3:157160200-157162400	Genic enhancers	HSMM	muscle
12	chr3:157160400-157195000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr3:157160600-157162200	Genic enhancers	NHLF	lung
14	chr3:157160600-157163200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr3:157160600-157176800	Weak transcription	Pancreas	Pancrea
16	chr3:157160800-157162000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr3:157160800-157162000	Genic enhancers	NHDF-Ad	bronchial
18	chr3:157160800-157162200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr3:157160800-157163400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr3:157160800-157163800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr3:157160800-157164600	Weak transcription	Fetal Stomach	stomach
22	chr3:157161000-157162000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr3:157161000-157162200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr3:157161000-157163600	Weak transcription	Stomach Smooth Muscle	stomach
25	chr3:157161000-157164800	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr3:157161200-157162600	Genic enhancers	Muscle Satellite Cultured Cells	--
27	chr3:157161200-157162600	Enhancers	Osteobl	bone
28	chr3:157161200-157164000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr3:157161200-157165800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr3:157161200-157186600	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr3:157161600-157162200	Enhancers	K562	blood
32	chr3:157161600-157165800	Enhancers	Primary monocytes fromperipheralblood	blood
33	chr3:157161800-157162000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr3:157161800-157162400	Enhancers	Fetal Muscle Leg	muscle
35	chr3:157161800-157163400	Enhancers	Monocytes-CD14+_RO01746	blood
36	chr3:157161800-157164600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr3:157161800-157164600	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr3:157161800-157164600	Enhancers	Fetal Lung	lung
39	chr3:157161800-157164800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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