Variant report

Variant	rs73873630
Chromosome Location	chr3:157016003-157016004
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10513511	0.87[ASN][1000 genomes]
rs16827507	0.92[ASN][1000 genomes]
rs17388582	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17454198	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1846849	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60379417	0.97[ASN][1000 genomes]
rs60626378	0.97[ASN][1000 genomes]
rs6795007	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6795781	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73156737	0.93[ASN][1000 genomes]
rs73156754	0.87[ASN][1000 genomes]
rs73873625	0.83[AFR][1000 genomes]
rs7430655	0.85[ASN][1000 genomes]
rs7643492	0.93[ASN][1000 genomes]
rs950418	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157004800-157028200	Weak transcription	HUVEC	blood vessel
2	chr3:157011200-157017800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:157013000-157017400	Weak transcription	HSMMtube	muscle
4	chr3:157013000-157018600	Weak transcription	K562	blood
5	chr3:157013000-157032600	Weak transcription	NH-A	brain
6	chr3:157013200-157017400	Weak transcription	HSMM	muscle
7	chr3:157013200-157017400	Weak transcription	NHLF	lung
8	chr3:157013200-157019600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr3:157014400-157018800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr3:157014400-157019200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr3:157015000-157017400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr3:157015200-157016400	Enhancers	Osteobl	bone
13	chr3:157015400-157019600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr3:157015600-157048400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr3:157015800-157016200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr3:157016000-157016400	Enhancers	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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