Variant report

Variant	rs73873625
Chromosome Location	chr3:157003178-157003179
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA2	chr3:157003147-157004298	HUVEC	blood vessel:	n/a	chr3:157003745-157003759

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156997473..157000192-chr3:157001265..157003413,2	K562	blood:
2	chr3:157001018..157003742-chr3:157209899..157211507,2	K562	blood:

Variant related genes	Relation type
ENSG00000243176	TF binding region

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10513505	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11914788	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11915720	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11917729	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16827306	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16827355	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16827378	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16827392	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2047646	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2049241	1.00[EUR][1000 genomes]
rs2321741	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35965122	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56810791	1.00[EUR][1000 genomes]
rs56844899	1.00[EUR][1000 genomes]
rs57897344	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57942815	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58794040	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59876369	1.00[EUR][1000 genomes]
rs60294797	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61173790	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6762249	1.00[EUR][1000 genomes]
rs6764944	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6770855	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6771465	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6772599	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6785398	1.00[EUR][1000 genomes]
rs6793336	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6796862	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6798526	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6798588	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6798689	0.83[AMR][1000 genomes]
rs6810035	1.00[EUR][1000 genomes]
rs6810106	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73873607	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873609	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73873615	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73873616	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73873630	0.83[AFR][1000 genomes]
rs73878005	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7618940	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7619015	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7623711	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7625819	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7630448	1.00[EUR][1000 genomes]
rs7635880	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7645454	1.00[EUR][1000 genomes]
rs7649998	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9756073	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156967200-157007800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:156988000-157005800	Weak transcription	Pancreas	Pancrea
3	chr3:156997000-157004400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:156997600-157003600	Weak transcription	K562	blood
5	chr3:156998800-157006000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr3:156999600-157003800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:157000600-157004000	Enhancers	NHDF-Ad	bronchial
8	chr3:157000600-157015400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr3:157000800-157004000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:157001400-157003200	Enhancers	HUVEC	blood vessel
11	chr3:157001600-157004000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:157001600-157008200	Weak transcription	NH-A	brain
13	chr3:157001800-157003400	Enhancers	Osteobl	bone
14	chr3:157001800-157004200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr3:157001800-157004400	Enhancers	Muscle Satellite Cultured Cells	--
16	chr3:157002000-157003200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr3:157002000-157003600	Weak transcription	NHLF	lung
18	chr3:157002600-157003600	Enhancers	Fetal Lung	lung
19	chr3:157003000-157003400	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr3:157003000-157003600	Enhancers	Fetal Stomach	stomach
21	chr3:157003000-157004400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr3:157003000-157004600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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