Variant report

Variant	rs6810035
Chromosome Location	chr3:156856748-156856749
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:156848498..156851635-chr3:156855250..156858331,3	K562	blood:
2	chr3:156394321..156397041-chr3:156854404..156856931,2	MCF-7	breast:
3	chr3:156855375..156857018-chr3:156858174..156860003,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163659	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10513505	1.00[EUR][1000 genomes]
rs11914788	1.00[EUR][1000 genomes]
rs11915720	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11917729	1.00[EUR][1000 genomes]
rs16827306	1.00[EUR][1000 genomes]
rs16827355	1.00[EUR][1000 genomes]
rs16827378	1.00[EUR][1000 genomes]
rs16827392	1.00[EUR][1000 genomes]
rs2047646	1.00[EUR][1000 genomes]
rs2049241	1.00[EUR][1000 genomes]
rs2321741	1.00[EUR][1000 genomes]
rs35965122	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56810791	1.00[EUR][1000 genomes]
rs56844899	1.00[EUR][1000 genomes]
rs57897344	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57942815	1.00[EUR][1000 genomes]
rs59876369	1.00[EUR][1000 genomes]
rs60294797	1.00[EUR][1000 genomes]
rs61173790	1.00[EUR][1000 genomes]
rs6762249	1.00[EUR][1000 genomes]
rs6764944	1.00[EUR][1000 genomes]
rs6769050	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6770855	1.00[EUR][1000 genomes]
rs6771465	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6772599	1.00[EUR][1000 genomes]
rs6785398	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6793336	1.00[EUR][1000 genomes]
rs6796862	1.00[EUR][1000 genomes]
rs6798526	1.00[EUR][1000 genomes]
rs6798588	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6798689	0.80[AFR][1000 genomes]
rs6810106	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73873609	1.00[EUR][1000 genomes]
rs73873615	1.00[EUR][1000 genomes]
rs73873616	1.00[EUR][1000 genomes]
rs73873625	1.00[EUR][1000 genomes]
rs73873791	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7618940	1.00[EUR][1000 genomes]
rs7619015	1.00[EUR][1000 genomes]
rs7623711	1.00[EUR][1000 genomes]
rs7625819	1.00[EUR][1000 genomes]
rs7630448	1.00[EUR][1000 genomes]
rs7635880	1.00[EUR][1000 genomes]
rs7645454	1.00[EUR][1000 genomes]
rs7649998	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349885	chr3:156685409-156878910	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases
2	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156848400-156866000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:156848400-156866000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:156848600-156876600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:156849000-156860000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr3:156849000-156861000	Weak transcription	Dnd41	blood
6	chr3:156849000-156861800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr3:156849000-156862400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:156849200-156861600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr3:156849200-156861600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr3:156849400-156861600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr3:156849800-156864000	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr3:156850000-156860200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr3:156850400-156860800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr3:156850400-156861600	Weak transcription	Hela-S3	cervix
15	chr3:156851000-156861000	Weak transcription	HUVEC	blood vessel
16	chr3:156852600-156873400	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr3:156852800-156859000	Weak transcription	Lung	lung
18	chr3:156853200-156865400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr3:156853400-156872000	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr3:156854000-156861200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr3:156854200-156860200	Weak transcription	Thymus	Thymus
22	chr3:156854800-156860200	Weak transcription	Esophagus	oesophagus
23	chr3:156855000-156860000	Weak transcription	Right Ventricle	heart
24	chr3:156855000-156860200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr3:156855000-156865800	Weak transcription	Aorta	Aorta
26	chr3:156855000-156866000	Weak transcription	Ovary	ovary
27	chr3:156855000-156872000	Weak transcription	Right Atrium	heart
28	chr3:156855200-156860000	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr3:156855200-156860200	Weak transcription	Small Intestine	intestine
30	chr3:156855200-156861600	Weak transcription	Psoas Muscle	Psoas
31	chr3:156855200-156861800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr3:156855200-156862000	Weak transcription	Pancreas	Pancrea
33	chr3:156855200-156862200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr3:156855400-156858600	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr3:156855400-156858800	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr3:156855400-156860000	Weak transcription	HSMM	muscle
37	chr3:156855400-156860200	Weak transcription	Spleen	Spleen
38	chr3:156855400-156860800	Weak transcription	GM12878-XiMat	blood
39	chr3:156855400-156862000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr3:156855400-156862200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr3:156855400-156862200	Weak transcription	HSMMtube	muscle
42	chr3:156855400-156865400	Weak transcription	Fetal Brain Male	brain
43	chr3:156855400-156865800	Weak transcription	Colonic Mucosa	Colon
44	chr3:156855400-156866000	Weak transcription	Fetal Heart	heart
45	chr3:156855400-156877000	Weak transcription	Gastric	stomach
46	chr3:156855600-156858000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr3:156855600-156858000	Weak transcription	Primary B cells from peripheral blood	blood
48	chr3:156855600-156858600	Weak transcription	Brain Cingulate Gyrus	brain
49	chr3:156855600-156858600	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr3:156855600-156859200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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