Variant report

Variant	rs57942815
Chromosome Location	chr3:157038305-157038306
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156951228..156953656-chr3:157037881..157040326,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10513505	1.00[EUR][1000 genomes]
rs11914788	1.00[EUR][1000 genomes]
rs11915720	1.00[EUR][1000 genomes]
rs11917729	1.00[EUR][1000 genomes]
rs16827306	1.00[EUR][1000 genomes]
rs16827355	1.00[EUR][1000 genomes]
rs16827378	1.00[EUR][1000 genomes]
rs16827392	1.00[EUR][1000 genomes]
rs2047646	1.00[EUR][1000 genomes]
rs2049241	1.00[EUR][1000 genomes]
rs2321741	1.00[EUR][1000 genomes]
rs35965122	1.00[EUR][1000 genomes]
rs56810791	1.00[EUR][1000 genomes]
rs56844899	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57897344	1.00[EUR][1000 genomes]
rs59876369	1.00[EUR][1000 genomes]
rs60294797	1.00[EUR][1000 genomes]
rs61173790	1.00[EUR][1000 genomes]
rs6762249	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6764944	1.00[EUR][1000 genomes]
rs6770855	1.00[EUR][1000 genomes]
rs6771465	1.00[EUR][1000 genomes]
rs6772599	1.00[EUR][1000 genomes]
rs6785398	1.00[EUR][1000 genomes]
rs6793336	1.00[EUR][1000 genomes]
rs6796862	1.00[EUR][1000 genomes]
rs6798526	1.00[EUR][1000 genomes]
rs6798588	1.00[EUR][1000 genomes]
rs6810035	1.00[EUR][1000 genomes]
rs6810106	1.00[EUR][1000 genomes]
rs73873609	1.00[EUR][1000 genomes]
rs73873615	1.00[EUR][1000 genomes]
rs73873616	1.00[EUR][1000 genomes]
rs73873625	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7618940	1.00[EUR][1000 genomes]
rs7619015	1.00[EUR][1000 genomes]
rs7623711	1.00[EUR][1000 genomes]
rs7625819	1.00[EUR][1000 genomes]
rs7630448	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7635880	1.00[EUR][1000 genomes]
rs7645454	1.00[EUR][1000 genomes]
rs7649998	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157015600-157048400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:157030600-157047000	Weak transcription	Osteobl	bone
3	chr3:157031800-157039200	Weak transcription	HUVEC	blood vessel
4	chr3:157036000-157047800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr3:157036200-157039000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:157036200-157040400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr3:157036800-157053000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:157038200-157039000	Weak transcription	Fetal Lung	lung

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