Variant report

Variant	rs6772599
Chromosome Location	chr3:156971148-156971149
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10513505	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11914788	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11915720	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11917729	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16827306	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16827355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16827378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16827392	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2047646	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2049241	1.00[EUR][1000 genomes]
rs2321741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35965122	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56810791	1.00[EUR][1000 genomes]
rs56844899	1.00[EUR][1000 genomes]
rs57897344	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57942815	1.00[EUR][1000 genomes]
rs58794040	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59876369	1.00[EUR][1000 genomes]
rs60294797	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61173790	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6762249	1.00[EUR][1000 genomes]
rs6764944	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6770855	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6771465	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6785398	1.00[EUR][1000 genomes]
rs6793336	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6796862	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6798526	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6798588	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6798689	0.83[AMR][1000 genomes]
rs6810035	1.00[EUR][1000 genomes]
rs6810106	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73873607	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873609	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73873615	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73873616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73873625	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73878005	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7618940	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7619015	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7623711	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7625819	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7630448	1.00[EUR][1000 genomes]
rs7635880	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7645454	1.00[EUR][1000 genomes]
rs7649998	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9756073	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156958400-156971200	Weak transcription	Primary B cells from cord blood	blood
2	chr3:156967000-156973400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr3:156967000-156979000	Weak transcription	HSMMtube	muscle
4	chr3:156967200-156974600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr3:156967200-156974600	Weak transcription	Osteobl	bone
6	chr3:156967200-156975000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:156967200-156982000	Weak transcription	Lung	lung
8	chr3:156967200-156989000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr3:156967200-157000000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr3:156967200-157000000	Weak transcription	NH-A	brain
11	chr3:156967200-157007800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr3:156967600-156973000	Weak transcription	HUVEC	blood vessel
13	chr3:156968000-156973400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr3:156968000-156973400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr3:156968000-156973400	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr3:156968000-156973400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr3:156968000-156976400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr3:156968000-156981800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr3:156968200-156973400	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr3:156968200-156973400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr3:156968200-156973400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr3:156968200-156973600	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr3:156968600-156973200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr3:156968600-156973600	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr3:156969800-156971400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr3:156970400-156973800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr3:156970800-156974400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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