Variant report

Variant	rs6798588
Chromosome Location	chr3:156895751-156895752
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR2F2	chr3:156895538-156896287	K562	blood:	n/a	n/a
2	NR2F2	chr3:156895693-156896194	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156895373..156897878-chr3:156901628..156904613,2	K562	blood:

Variant related genes	Relation type
RNA5SP146	TF binding region

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10513505	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11914788	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11915720	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11917729	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16827306	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16827355	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16827378	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16827392	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2047646	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2049241	1.00[EUR][1000 genomes]
rs2321741	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35965122	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56810791	1.00[EUR][1000 genomes]
rs56844899	1.00[EUR][1000 genomes]
rs57016273	0.85[AFR][1000 genomes]
rs57897344	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57942815	1.00[EUR][1000 genomes]
rs58794040	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59876369	1.00[EUR][1000 genomes]
rs60294797	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61173790	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6762249	1.00[EUR][1000 genomes]
rs6764944	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6769050	0.92[AFR][1000 genomes]
rs6770855	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6771465	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6772599	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6785398	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6793336	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6796862	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6798526	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6798689	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6810035	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6810106	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73873607	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873609	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73873615	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73873616	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73873625	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73878003	0.81[AFR][1000 genomes]
rs73878005	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7618940	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7619015	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7623711	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7625819	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7630448	1.00[EUR][1000 genomes]
rs7635880	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7645454	1.00[EUR][1000 genomes]
rs7649998	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9756073	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv520331	chr3:156858300-156915650	Flanking Active TSS Active TSS Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	139 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156894000-156900800	Weak transcription	Ovary	ovary
2	chr3:156894200-156896200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:156894200-156896200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:156894200-156896200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:156894200-156896200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr3:156894200-156896200	Weak transcription	Colonic Mucosa	Colon
7	chr3:156894200-156896200	Weak transcription	Fetal Stomach	stomach
8	chr3:156894200-156901600	Weak transcription	Right Atrium	heart
9	chr3:156894200-156903000	Weak transcription	Esophagus	oesophagus
10	chr3:156894400-156895800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr3:156894400-156902400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr3:156894400-156902800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr3:156894400-156903000	Weak transcription	HSMM	muscle
14	chr3:156894400-156903200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr3:156894400-156903400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr3:156894400-156903400	Weak transcription	Brain Angular Gyrus	brain
17	chr3:156894400-156903800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr3:156894400-156906400	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr3:156894400-156906600	Weak transcription	Right Ventricle	heart
20	chr3:156894400-156906800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr3:156894600-156895800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr3:156894600-156895800	Enhancers	Colon Smooth Muscle	Colon
23	chr3:156894600-156896000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr3:156894600-156896000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr3:156894600-156900000	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr3:156894600-156902800	Weak transcription	Liver	Liver
27	chr3:156894600-156902800	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr3:156894600-156903000	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr3:156894600-156903000	Weak transcription	Duodenum Mucosa	Duodenum
30	chr3:156894600-156903000	Weak transcription	NHLF	lung
31	chr3:156894600-156903800	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr3:156894600-156904000	Weak transcription	Rectal Smooth Muscle	rectum
33	chr3:156894600-156904000	Weak transcription	Osteobl	bone
34	chr3:156894600-156904400	Weak transcription	Adipose Nuclei	Adipose
35	chr3:156894600-156909000	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr3:156894800-156895800	Enhancers	K562	blood
37	chr3:156894800-156896200	Weak transcription	Fetal Intestine Small	intestine
38	chr3:156894800-156896200	Weak transcription	Fetal Thymus	thymus
39	chr3:156894800-156896600	Weak transcription	NHDF-Ad	bronchial
40	chr3:156894800-156896800	Weak transcription	Thymus	Thymus
41	chr3:156894800-156898800	Weak transcription	Primary T cells from cord blood	blood
42	chr3:156894800-156901600	Weak transcription	Stomach Smooth Muscle	stomach
43	chr3:156894800-156902600	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr3:156894800-156902800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr3:156894800-156902800	Weak transcription	Fetal Lung	lung
46	chr3:156894800-156903000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr3:156894800-156903000	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr3:156894800-156904000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr3:156895000-156895800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr3:156895000-156896200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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