Variant report

Variant	rs73878003
Chromosome Location	chr3:156904075-156904076
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:156900351..156902675-chr3:156903274..156905529,2	MCF-7	breast:
2	chr3:156901238..156905299-chr3:156943501..156945279,3	K562	blood:
3	chr3:156902735..156905380-chr3:156906139..156908036,2	K562	blood:
4	chr3:156895373..156897878-chr3:156901628..156904613,2	K562	blood:
5	chr3:156900974..156902930-chr3:156903103..156904931,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10513504	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1113276	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16827306	0.84[AFR][1000 genomes]
rs17386631	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17386666	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17387112	0.87[EUR][1000 genomes]
rs57016273	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58794040	0.81[AFR][1000 genomes]
rs60294797	0.82[AFR][1000 genomes]
rs61173790	0.86[AFR][1000 genomes]
rs6764944	0.96[AFR][1000 genomes]
rs6793336	0.86[AFR][1000 genomes]
rs6798526	0.86[AFR][1000 genomes]
rs6798588	0.81[AFR][1000 genomes]
rs6798689	0.81[AFR][1000 genomes]
rs73878005	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv520331	chr3:156858300-156915650	Flanking Active TSS Active TSS Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	139 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156894400-156906400	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr3:156894400-156906600	Weak transcription	Right Ventricle	heart
3	chr3:156894400-156906800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:156894600-156904400	Weak transcription	Adipose Nuclei	Adipose
5	chr3:156894600-156909000	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr3:156900000-156905400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr3:156901200-156904200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
8	chr3:156901200-156905000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
9	chr3:156901400-156904600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr3:156901400-156904800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
11	chr3:156901400-156904800	ZNF genes & repeats	Primary B cells from cord blood	blood
12	chr3:156901600-156904800	ZNF genes & repeats	Fetal Intestine Small	intestine
13	chr3:156901600-156904800	Strong transcription	Stomach Smooth Muscle	stomach
14	chr3:156901800-156904600	Weak transcription	Right Atrium	heart
15	chr3:156902200-156905000	ZNF genes & repeats	Fetal Stomach	stomach
16	chr3:156902400-156904200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr3:156902400-156904800	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
18	chr3:156902400-156905000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
19	chr3:156902400-156905200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr3:156902600-156904800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
21	chr3:156902800-156904200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr3:156902800-156904400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
23	chr3:156902800-156904600	ZNF genes & repeats	Fetal Muscle Leg	muscle
24	chr3:156902800-156904800	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
25	chr3:156902800-156904800	ZNF genes & repeats	Fetal Lung	lung
26	chr3:156902800-156905000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
27	chr3:156902800-156905000	ZNF genes & repeats	Liver	Liver
28	chr3:156902800-156905000	Strong transcription	Duodenum Smooth Muscle	Duodenum
29	chr3:156902800-156905200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr3:156902800-156905200	ZNF genes & repeats	Primary T cells from cord blood	blood
31	chr3:156903000-156904200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
32	chr3:156903000-156904200	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
33	chr3:156903000-156904200	ZNF genes & repeats	Gastric	stomach
34	chr3:156903000-156904400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
35	chr3:156903000-156904400	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
36	chr3:156903000-156904400	Strong transcription	HSMM	muscle
37	chr3:156903000-156904800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr3:156903000-156904800	ZNF genes & repeats	Aorta	Aorta
39	chr3:156903000-156905000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
40	chr3:156903000-156905000	ZNF genes & repeats	Lung	lung
41	chr3:156903000-156905000	ZNF genes & repeats	Thymus	Thymus
42	chr3:156903200-156905000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr3:156903200-156905400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
44	chr3:156903400-156904200	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
45	chr3:156903400-156904200	Strong transcription	Brain Angular Gyrus	brain
46	chr3:156903400-156904200	ZNF genes & repeats	Fetal Kidney	kidney
47	chr3:156903400-156904600	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
48	chr3:156903400-156904600	ZNF genes & repeats	Ovary	ovary
49	chr3:156903400-156905000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr3:156903400-156905000	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood

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