Variant report

Variant	rs10513504
Chromosome Location	chr3:156921029-156921030
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156875185..156880246-chr3:156915839..156922107,12	K562	blood:
2	chr3:156872801..156875141-chr3:156917968..156922076,3	K562	blood:
3	chr3:156920987..156922623-chr3:156924558..156927431,2	K562	blood:
4	chr3:156892903..156894645-chr3:156919643..156921144,2	K562	blood:
5	chr3:156875185..156879753-chr3:156915839..156922107,8	K562	blood:
6	chr3:156919699..156922088-chr3:156955960..156958595,2	K562	blood:
7	chr3:156891845..156893389-chr3:156917560..156921097,3	MCF-7	breast:
8	chr3:156875720..156879203-chr3:156917751..156922284,5	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10513511	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs10513513	0.85[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap]
rs1113276	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11918443	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs16827507	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16827579	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs17386631	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17386666	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17387112	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[EUR][1000 genomes]
rs17388582	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17454198	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap]
rs1846849	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs57016273	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6795007	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap]
rs73878003	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7430655	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs7643492	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs950418	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156905000-156922800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:156919400-156929000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr3:156919600-156922400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:156919600-156922400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr3:156919600-156922400	Weak transcription	HUVEC	blood vessel
6	chr3:156919600-156922400	Weak transcription	NHDF-Ad	bronchial
7	chr3:156919600-156928800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr3:156919800-156922200	Weak transcription	Osteobl	bone
9	chr3:156919800-156922400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:156919800-156922400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:156919800-156922400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr3:156919800-156922600	Weak transcription	Colon Smooth Muscle	Colon
13	chr3:156920000-156922400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr3:156920000-156922400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr3:156920000-156922800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:156920200-156929600	Weak transcription	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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