Variant report

Variant	rs7430655
Chromosome Location	chr3:156980632-156980633
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156974074..156978072-chr3:156979844..156983022,4	K562	blood:
2	chr3:156976265..156978108-chr3:156979247..156980892,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10513504	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs10513511	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10513513	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs11918443	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs11926562	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs16827507	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16827579	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs17386631	0.83[EUR][1000 genomes]
rs17386666	0.83[EUR][1000 genomes]
rs17387112	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17388582	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17454198	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1846849	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60379417	0.82[ASN][1000 genomes]
rs60626378	0.82[ASN][1000 genomes]
rs6795007	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6795781	0.83[ASN][1000 genomes]
rs73873630	0.85[ASN][1000 genomes]
rs7643492	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs950418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156967200-156982000	Weak transcription	Lung	lung
2	chr3:156967200-156989000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr3:156967200-157000000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr3:156967200-157000000	Weak transcription	NH-A	brain
5	chr3:156967200-157007800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:156968000-156981800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:156974000-156982400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr3:156975600-156980800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:156977800-156982000	Enhancers	Osteobl	bone
10	chr3:156978200-156981600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr3:156978400-156981000	Weak transcription	HSMM	muscle
12	chr3:156978400-156981600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr3:156978600-156981400	Enhancers	Muscle Satellite Cultured Cells	--
14	chr3:156978800-156981400	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr3:156979400-156981400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr3:156979600-156997000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr3:156980000-156981000	Weak transcription	NHDF-Ad	bronchial
18	chr3:156980200-156981000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr3:156980400-156980800	Enhancers	HSMMtube	muscle
20	chr3:156980400-156981000	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr3:156980400-156981200	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr3:156980400-156981600	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr3:156980400-156982400	Enhancers	HUVEC	blood vessel
24	chr3:156980600-156981000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr3:156980600-156981000	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr3:156980600-156981200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr3:156980600-156981200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr3:156980600-156981200	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr3:156980600-156981200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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