Variant report

Variant	rs950418
Chromosome Location	chr3:156991095-156991096
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156988336..156991271-chr3:156994407..156996753,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10513504	0.80[EUR][1000 genomes]
rs17386631	0.80[EUR][1000 genomes]
rs17386666	0.80[EUR][1000 genomes]
rs17387112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17388582	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17454198	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1846849	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60379417	0.82[ASN][1000 genomes]
rs60626378	0.82[ASN][1000 genomes]
rs6795007	0.84[ASN][1000 genomes]
rs6795781	0.83[ASN][1000 genomes]
rs73873630	0.85[ASN][1000 genomes]
rs7430655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156967200-157000000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:156967200-157000000	Weak transcription	NH-A	brain
3	chr3:156967200-157007800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:156979600-156997000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:156981200-156991400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:156982400-156992800	Weak transcription	Osteobl	bone
7	chr3:156982400-156997000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr3:156984200-156998200	Weak transcription	HUVEC	blood vessel
9	chr3:156988000-157005800	Weak transcription	Pancreas	Pancrea
10	chr3:156988600-156991200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:156989400-156999800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr3:156989600-156991800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr3:156990000-156991200	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr3:156990600-156991800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:156990600-156992000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr3:156990600-156993800	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr3:156990800-156994600	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr3:156991000-156991400	Enhancers	H1 Cell Line	embryonic stem cell
19	chr3:156991000-156992000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr3:156991000-156992000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr3:156991000-156993000	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr3:156991000-156993200	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr3:156991000-156994200	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr3:156991000-156994600	Enhancers	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links