Variant report

Variant	rs73156737
Chromosome Location	chr3:157041234-157041235
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10513511	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16827507	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17388582	0.82[ASN][1000 genomes]
rs17454198	0.82[ASN][1000 genomes]
rs1846849	0.92[ASN][1000 genomes]
rs60379417	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60626378	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6795007	0.92[ASN][1000 genomes]
rs6795781	0.91[ASN][1000 genomes]
rs73156754	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73873630	0.93[ASN][1000 genomes]
rs7643492	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157015600-157048400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:157030600-157047000	Weak transcription	Osteobl	bone
3	chr3:157036000-157047800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr3:157036800-157053000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:157039800-157051000	Weak transcription	HUVEC	blood vessel
6	chr3:157041000-157065600	Weak transcription	Pancreas	Pancrea
7	chr3:157041200-157041600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links