Variant report

Variant	rs6795690
Chromosome Location	chr3:145761246-145761247
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs13327094	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1375578	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1375582	0.83[EUR][1000 genomes]
rs1375584	0.83[EUR][1000 genomes]
rs1375587	0.84[EUR][1000 genomes]
rs1449438	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1449439	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1449445	0.82[EUR][1000 genomes]
rs1584489	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2029137	0.83[EUR][1000 genomes]
rs2029138	0.83[EUR][1000 genomes]
rs2197908	0.83[EUR][1000 genomes]
rs2305274	0.84[EUR][1000 genomes]
rs3792341	0.83[EUR][1000 genomes]
rs3804670	0.84[EUR][1000 genomes]
rs3828381	0.83[EUR][1000 genomes]
rs4681111	0.83[EUR][1000 genomes]
rs4681113	0.84[EUR][1000 genomes]
rs6440415	0.82[EUR][1000 genomes]
rs6710	0.84[EUR][1000 genomes]
rs6770862	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7617913	0.83[EUR][1000 genomes]
rs7639592	0.83[EUR][1000 genomes]
rs764755	0.83[EUR][1000 genomes]
rs7647911	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs959329	0.82[EUR][1000 genomes]
rs9813047	0.83[EUR][1000 genomes]
rs9849076	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9852725	0.83[EUR][1000 genomes]
rs9857975	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9867807	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9874388	0.83[EUR][1000 genomes]
rs9874627	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877584	chr3:144903957-145833232	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv525829	chr3:145614317-145863779	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv4046	chr3:145693249-145880189	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:145739400-145768600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr3:145752400-145768200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr3:145752600-145767600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr3:145752600-145775800	Weak transcription	Osteobl	bone
5	chr3:145752600-145776000	Weak transcription	HSMM	muscle
6	chr3:145760600-145761600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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