Variant report

Variant	rs6796057
Chromosome Location	chr3:101944127-101944128
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:101520497..101522468-chr3:101943285..101944945,2	MCF-7	breast:
2	chr3:101527614..101528630-chr3:101943465..101944903,6	MCF-7	breast:
3	chr3:101572059..101574689-chr3:101942930..101945828,2	MCF-7	breast:
4	chr3:101531865..101533240-chr3:101943943..101944930,7	MCF-7	breast:
5	chr3:101565750..101571242-chr3:101941338..101947928,14	MCF-7	breast:
6	chr3:101531982..101533617-chr3:101943837..101944918,12	MCF-7	breast:
7	chr3:101521699..101522654-chr3:101944004..101944935,3	MCF-7	breast:
8	chr3:101527598..101532607-chr3:101943498..101946338,5	MCF-7	breast:
9	chr3:101527800..101528775-chr3:101943010..101944822,8	MCF-7	breast:
10	chr3:101576577..101579406-chr3:101942461..101944308,2	MCF-7	breast:
11	chr3:101566803..101573305-chr3:101941111..101948292,17	MCF-7	breast:
12	chr3:101414730..101415572-chr3:101944012..101944865,2	MCF-7	breast:
13	chr3:101630807..101633281-chr3:101942121..101944392,2	MCF-7	breast:
14	chr3:101887666..101889372-chr3:101942698..101945204,2	MCF-7	breast:
15	chr3:101898967..101900691-chr3:101944088..101946437,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000144802	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs57809401	1.00[AMR][1000 genomes]
rs58095704	1.00[AMR][1000 genomes]
rs59542210	1.00[AMR][1000 genomes]
rs6803529	1.00[AMR][1000 genomes]
rs7639553	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497784	chr3:101315009-102092989	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101940600-101944200	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr3:101940800-101944400	Enhancers	Primary T cells from cord blood	blood
3	chr3:101940800-101944400	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr3:101940800-101944400	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr3:101941400-101944400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr3:101941600-101944400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr3:101942000-101944400	Enhancers	Fetal Intestine Small	intestine
8	chr3:101942400-101944400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr3:101942600-101944400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr3:101942600-101944400	Enhancers	NHEK	skin
11	chr3:101942600-101947800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr3:101942800-101945200	Enhancers	Muscle Satellite Cultured Cells	--
13	chr3:101943000-101957000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr3:101943200-101944400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr3:101943200-101944400	Enhancers	Liver	Liver
16	chr3:101943200-101948200	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr3:101943200-101948600	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr3:101943400-101944400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr3:101943400-101948200	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr3:101943600-101944600	Enhancers	A549	lung
21	chr3:101943800-101944200	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
22	chr3:101943800-101944200	Enhancers	HSMM	muscle
23	chr3:101943800-101944400	Enhancers	Stomach Mucosa	stomach
24	chr3:101943800-101945200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr3:101944000-101944200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr3:101944000-101944200	Enhancers	Primary B cells from peripheral blood	blood
27	chr3:101944000-101944400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr3:101944000-101944400	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr3:101944000-101944400	Enhancers	HMEC	breast
30	chr3:101944000-101947800	Weak transcription	Osteobl	bone

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