Variant report

Variant	rs6803529
Chromosome Location	chr3:102029466-102029467
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs57809401	1.00[AMR][1000 genomes]
rs58095704	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59542210	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6441662	1.00[AMR][1000 genomes]
rs6796057	1.00[AMR][1000 genomes]
rs7619770	1.00[AMR][1000 genomes]
rs7633434	1.00[AMR][1000 genomes]
rs7639553	1.00[AMR][1000 genomes]
rs7642833	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497784	chr3:101315009-102092989	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:102029400-102040400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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