Variant report

Variant	rs6796241
Chromosome Location	chr3:111925747-111925748
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10511308	0.91[EUR][1000 genomes]
rs11919901	0.83[EUR][1000 genomes]
rs11926448	0.86[EUR][1000 genomes]
rs11926968	0.83[EUR][1000 genomes]
rs12486177	0.91[EUR][1000 genomes]
rs13061801	0.86[EUR][1000 genomes]
rs13080696	0.88[EUR][1000 genomes]
rs13086724	0.91[EUR][1000 genomes]
rs13087387	0.91[EUR][1000 genomes]
rs13090344	0.90[EUR][1000 genomes]
rs13096855	0.89[EUR][1000 genomes]
rs1586873	0.83[EUR][1000 genomes]
rs2399406	0.91[EUR][1000 genomes]
rs2399407	0.91[EUR][1000 genomes]
rs34043603	0.86[EUR][1000 genomes]
rs4438628	0.91[EUR][1000 genomes]
rs4682371	0.83[EUR][1000 genomes]
rs6781137	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10307	chr3:111903974-112087686	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv591291	chr3:111914624-111962851	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv591292	chr3:111914624-111993915	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111913200-111930000	Weak transcription	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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