Variant report

Variant	rs34043603
Chromosome Location	chr3:111867890-111867891
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10511306	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10511307	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10511308	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11917180	0.81[EUR][1000 genomes]
rs11919901	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11924882	0.81[EUR][1000 genomes]
rs11926448	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11926968	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11928130	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12486177	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13061801	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13069933	0.85[AFR][1000 genomes]
rs13080696	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13086724	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13087387	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13090344	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13096855	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1388855	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1492481	0.83[AFR][1000 genomes]
rs1586873	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1602672	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2399406	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2399407	0.82[AFR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4438628	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4682371	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6781137	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6796241	0.86[EUR][1000 genomes]
rs879652	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010219	chr3:111856709-111923647	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	esv3323712	chr3:111861311-111890479	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111866200-111875800	Weak transcription	Right Ventricle	heart
2	chr3:111867200-111869200	ZNF genes & repeats	HMEC	breast
3	chr3:111867400-111868800	ZNF genes & repeats	Gastric	stomach
4	chr3:111867400-111868800	ZNF genes & repeats	Thymus	Thymus
5	chr3:111867400-111869000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:111867400-111869000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr3:111867400-111869200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr3:111867600-111868000	ZNF genes & repeats	Colonic Mucosa	Colon
9	chr3:111867600-111868000	ZNF genes & repeats	Pancreas	Pancrea
10	chr3:111867600-111868800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr3:111867600-111868800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr3:111867600-111868800	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
13	chr3:111867600-111869400	ZNF genes & repeats	Left Ventricle	heart
14	chr3:111867800-111868000	ZNF genes & repeats	Aorta	Aorta
15	chr3:111867800-111868800	ZNF genes & repeats	Fetal Stomach	stomach
16	chr3:111867800-111869000	ZNF genes & repeats	Esophagus	oesophagus
17	chr3:111867800-111869400	Enhancers	NHEK	skin

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