Variant report

Variant	rs1602672
Chromosome Location	chr3:111863777-111863778
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10511306	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10511307	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11926448	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11928130	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13061801	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs13069933	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13080696	0.81[EUR][1000 genomes]
rs13090344	0.80[EUR][1000 genomes]
rs1388855	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1492480	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1492481	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1492483	0.89[ASN][1000 genomes]
rs1492484	0.89[ASN][1000 genomes]
rs1492485	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1492486	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1948404	0.87[EUR][1000 genomes]
rs1994772	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2029638	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs34043603	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs35411358	0.97[EUR][1000 genomes]
rs6781137	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7651558	0.88[ASN][1000 genomes]
rs879652	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs950528	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010219	chr3:111856709-111923647	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	esv3323712	chr3:111861311-111890479	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111853400-111867400	Weak transcription	Gastric	stomach
2	chr3:111856200-111867400	Weak transcription	Thymus	Thymus
3	chr3:111856200-111867600	Weak transcription	Left Ventricle	heart
4	chr3:111863000-111867400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr3:111863400-111864400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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