Variant report

Variant	rs13069933
Chromosome Location	chr3:111850383-111850384
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFATC1	chr3:111846287-111853296	GM12878	blood:	n/a	n/a
2	POLR2A	chr3:111848615-111850662	GM12891	blood:	n/a	n/a
3	POLR2A	chr3:111846191-111854054	GM12892	blood:	n/a	n/a
4	POLR2A	chr3:111846327-111850616	GM12891	blood:	n/a	n/a
5	MAZ	chr3:111850037-111852643	GM12878	blood:	n/a	chr3:111852319-111852327 chr3:111852129-111852139
6	STAT5A	chr3:111850377-111854015	GM12878	blood:	n/a	chr3:111851865-111851876 chr3:111851072-111851092 chr3:111851295-111851306
7	BCLAF1	chr3:111848606-111850771	GM12878	blood:	n/a	n/a
8	TBP	chr3:111848676-111853001	GM12878	blood:	n/a	n/a
9	BCLAF1	chr3:111847282-111850673	GM12878	blood:	n/a	n/a
10	POLR2A	chr3:111850343-111850499	GM12878	blood:	n/a	n/a
11	POLR2A	chr3:111846304-111850588	GM12878	blood:	n/a	n/a
12	POLR2A	chr3:111846299-111854337	Raji	blood:	n/a	n/a
13	NFATC1	chr3:111846108-111854042	GM12878	blood:	n/a	n/a
14	POLR2A	chr3:111847278-111850662	GM12891	blood:	n/a	n/a
15	NFIC	chr3:111849961-111852875	GM12878	blood:	n/a	n/a
16	POLR2A	chr3:111846326-111850640	GM12892	blood:	n/a	n/a
17	NFIC	chr3:111845900-111853068	GM12878	blood:	n/a	n/a
18	POLR2A	chr3:111846294-111850516	GM12878	blood:	n/a	n/a
19	POLR2A	chr3:111846063-111856284	GM12878	blood:	n/a	n/a
20	POLR2A	chr3:111846207-111853952	GM12892	blood:	n/a	n/a
21	POLR2A	chr3:111848814-111850620	GM12891	blood:	n/a	n/a
22	POLR2A	chr3:111846124-111855250	GM12878	blood:	n/a	n/a
23	CUX1	chr3:111848565-111852995	GM12878	blood:	n/a	n/a
24	POLR2A	chr3:111843489-111856486	GM12878	blood:	n/a	n/a
25	WRNIP1	chr3:111847344-111850511	GM12878	blood:	n/a	n/a
26	POLR2A	chr3:111847163-111853431	GM15510	blood:	n/a	n/a
27	MTA3	chr3:111845901-111857252	GM12878	blood:	n/a	n/a
28	MTA3	chr3:111846320-111854316	GM12878	blood:	n/a	n/a
29	POLR2A	chr3:111850319-111850498	GM12878	blood:	n/a	n/a
30	POLR2A	chr3:111846225-111854392	GM12891	blood:	n/a	n/a
31	PML	chr3:111846035-111850490	GM12878	blood:	n/a	n/a
32	BHLHE40	chr3:111850034-111853011	GM12878	blood:	n/a	n/a
33	POLR2A	chr3:111846115-111850762	GM12878	blood:	n/a	n/a
34	MXI1	chr3:111850029-111852982	GM12878	blood:	n/a	n/a
35	POLR2A	chr3:111846166-111854300	GM12892	blood:	n/a	n/a
36	ATF2	chr3:111850206-111854200	GM12878	blood:	n/a	n/a
37	POLR2A	chr3:111846220-111850660	GM12892	blood:	n/a	n/a
38	CHD1	chr3:111846029-111853199	GM12878	blood:	n/a	n/a
39	POLR2A	chr3:111846124-111854277	GM18505	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000261488	TF binding region

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10511306	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10511307	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11926448	0.85[AFR][1000 genomes]
rs11928130	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13061801	0.85[AFR][1000 genomes]
rs13080696	0.82[AFR][1000 genomes]
rs1388855	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1492480	0.94[ASN][1000 genomes]
rs1492481	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1492483	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1492484	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1492485	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1492486	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1602672	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1948404	0.97[EUR][1000 genomes]
rs1994772	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2029638	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34043603	0.85[AFR][1000 genomes]
rs35411358	0.87[EUR][1000 genomes]
rs6781137	0.85[AFR][1000 genomes]
rs7651558	0.93[ASN][1000 genomes]
rs879652	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs950528	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111810400-111852000	Weak transcription	Esophagus	oesophagus
2	chr3:111812200-111853000	Weak transcription	Right Ventricle	heart
3	chr3:111830600-111853200	Weak transcription	Lung	lung
4	chr3:111834200-111853800	Weak transcription	Fetal Intestine Small	intestine
5	chr3:111839000-111853000	Weak transcription	Left Ventricle	heart
6	chr3:111840800-111855800	Weak transcription	NH-A	brain
7	chr3:111844800-111855800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:111845000-111851000	Enhancers	Primary B cells from peripheral blood	blood
9	chr3:111845600-111850800	Weak transcription	HSMMtube	muscle
10	chr3:111845600-111852800	Weak transcription	Fetal Muscle Trunk	muscle
11	chr3:111845600-111855800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr3:111845800-111851800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr3:111845800-111853200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr3:111846400-111850800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
15	chr3:111846800-111850800	Enhancers	Primary T cells fromperipheralblood	blood
16	chr3:111846800-111851600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr3:111846800-111853000	Weak transcription	Adipose Nuclei	Adipose
18	chr3:111847000-111851000	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr3:111847000-111851800	Weak transcription	Fetal Muscle Leg	muscle
20	chr3:111847000-111853200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr3:111847400-111851000	Enhancers	Primary B cells from cord blood	blood
22	chr3:111847600-111851200	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr3:111848000-111851000	Weak transcription	Duodenum Mucosa	Duodenum
24	chr3:111848000-111853200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr3:111848200-111857000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr3:111848400-111851000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr3:111848400-111853800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr3:111848400-111854600	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr3:111848400-111854800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr3:111848400-111855800	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr3:111848400-111856000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr3:111848400-111856800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr3:111848600-111851000	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr3:111848600-111851200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr3:111848600-111851600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr3:111848800-111850400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr3:111848800-111851000	Weak transcription	NHEK	skin
38	chr3:111848800-111851400	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr3:111848800-111851600	Weak transcription	HMEC	breast
40	chr3:111848800-111851800	Weak transcription	Placenta	Placenta
41	chr3:111848800-111853600	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr3:111848800-111854200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr3:111849000-111854800	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr3:111849200-111850600	Flanking Active TSS	Fetal Thymus	thymus
45	chr3:111849200-111853000	Weak transcription	Hela-S3	cervix
46	chr3:111849200-111855000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr3:111849400-111851000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr3:111849400-111851400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr3:111849400-111851400	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr3:111849600-111850400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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