Variant report

Variant	rs6796471
Chromosome Location	chr3:69210918-69210919
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13321417	1.00[AMR][1000 genomes]
rs59225784	1.00[AMR][1000 genomes]
rs61737464	1.00[AMR][1000 genomes]
rs61737489	1.00[AMR][1000 genomes]
rs6766710	1.00[AMR][1000 genomes]
rs6806274	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7626366	1.00[AMR][1000 genomes]
rs9757432	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9850164	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876933	chr3:69059023-69227379	Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69209600-69228000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr3:69209800-69211200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr3:69210600-69211200	Enhancers	Fetal Lung	lung
4	chr3:69210600-69211200	Enhancers	Dnd41	blood
5	chr3:69210800-69211600	Enhancers	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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