Variant report

Variant	rs9757432
Chromosome Location	chr3:69214760-69214761
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13321417	1.00[AMR][1000 genomes]
rs59225784	1.00[AMR][1000 genomes]
rs61737464	1.00[AMR][1000 genomes]
rs61737489	1.00[AMR][1000 genomes]
rs6766710	1.00[AMR][1000 genomes]
rs6796471	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6806274	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7626366	1.00[AMR][1000 genomes]
rs9850164	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876933	chr3:69059023-69227379	Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69209600-69228000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr3:69211200-69218800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr3:69211200-69219600	Weak transcription	Fetal Lung	lung
4	chr3:69211200-69219800	Weak transcription	Fetal Brain Female	brain
5	chr3:69211200-69219800	Weak transcription	Dnd41	blood
6	chr3:69211200-69226600	Weak transcription	Fetal Kidney	kidney
7	chr3:69211200-69229400	Weak transcription	Fetal Brain Male	brain
8	chr3:69211600-69220200	Weak transcription	Brain Hippocampus Middle	brain
9	chr3:69211600-69220200	Weak transcription	Brain Substantia Nigra	brain
10	chr3:69211600-69223400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr3:69211600-69230200	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr3:69211600-69231000	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr3:69212000-69215600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr3:69212200-69219800	Weak transcription	Brain Cingulate Gyrus	brain
15	chr3:69213200-69216200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr3:69213400-69215800	Weak transcription	HSMM	muscle
17	chr3:69213400-69225400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr3:69214000-69218600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr3:69214200-69219800	Weak transcription	Placenta	Placenta
20	chr3:69214200-69226600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr3:69214400-69216400	Weak transcription	NHEK	skin
22	chr3:69214600-69214800	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr3:69214600-69215600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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