Variant report

Variant rs6797014
Chromosome Location chr3:53808198-53808199
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:59 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:53785000-53811200 Weak transcription Spleen Spleen
2 chr3:53786000-53808200 Weak transcription Liver Liver
3 chr3:53789800-53814600 Weak transcription Brain Substantia Nigra brain
4 chr3:53802400-53818200 Weak transcription H9 Cell Line embryonic stem cell
5 chr3:53803400-53808200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
6 chr3:53805000-53810200 Weak transcription Pancreatic Islets Pancreatic Islet
7 chr3:53806200-53811800 Enhancers NHDF-Ad bronchial
8 chr3:53806400-53808200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
9 chr3:53806400-53808600 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
10 chr3:53806600-53808200 Enhancers Fetal Stomach stomach
11 chr3:53806600-53808400 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
12 chr3:53806600-53808400 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
13 chr3:53806600-53808400 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
14 chr3:53806600-53808800 Enhancers NHLF lung
15 chr3:53806800-53808400 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
16 chr3:53806800-53808400 Enhancers Adipose Nuclei Adipose
17 chr3:53806800-53808400 Enhancers Osteobl bone
18 chr3:53806800-53813000 Enhancers Breast Myoepithelial Primary Cells Breast
19 chr3:53807000-53808200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
20 chr3:53807000-53808200 Enhancers Fetal Brain Female brain
21 chr3:53807000-53808400 Enhancers Brain Inferior Temporal Lobe brain
22 chr3:53807000-53808400 Enhancers Ovary ovary
23 chr3:53807000-53808600 Enhancers Fetal Thymus thymus
24 chr3:53807000-53808800 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
25 chr3:53807000-53809000 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
26 chr3:53807200-53808200 Bivalent Enhancer Muscle Satellite Cultured Cells --
27 chr3:53807200-53808200 Genic enhancers Fetal Intestine Small intestine
28 chr3:53807200-53808600 Enhancers Placenta Amnion Placenta Amnion
29 chr3:53807200-53809400 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
30 chr3:53807400-53808200 Enhancers Brain Anterior Caudate brain
31 chr3:53807400-53808200 Enhancers Colon Smooth Muscle Colon
32 chr3:53807400-53808200 Enhancers Esophagus oesophagus
33 chr3:53807400-53808200 Enhancers Fetal Adrenal Gland Adrenal Gland
34 chr3:53807400-53808200 Enhancers Fetal Brain Male brain
35 chr3:53807400-53808200 Enhancers Rectal Smooth Muscle rectum
36 chr3:53807400-53808200 Enhancers HMEC breast
37 chr3:53807400-53808400 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
38 chr3:53807400-53808600 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
39 chr3:53807400-53808800 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
40 chr3:53807400-53808800 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
41 chr3:53807400-53808800 Enhancers Lung lung
42 chr3:53807400-53808800 Enhancers Pancreas Pancrea
43 chr3:53807400-53819200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
44 chr3:53807600-53809400 Weak transcription Fetal Intestine Large intestine
45 chr3:53807600-53810400 Weak transcription NH-A brain
46 chr3:53807600-53814800 Weak transcription Right Atrium heart
47 chr3:53807600-53829800 Weak transcription Brain Angular Gyrus brain
48 chr3:53807800-53808200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
49 chr3:53807800-53808800 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
50 chr3:53807800-53808800 Flanking Active TSS GM12878-XiMat blood

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