Variant report

Variant rs3846215
Chromosome Location chr3:53782140-53782141
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:45 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:53764800-53783400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
2 chr3:53765000-53788600 Weak transcription Fetal Kidney kidney
3 chr3:53765200-53783400 Weak transcription Brain Angular Gyrus brain
4 chr3:53768600-53801000 Strong transcription Fetal Lung lung
5 chr3:53769600-53787400 Weak transcription Duodenum Mucosa Duodenum
6 chr3:53773000-53807600 Strong transcription Fetal Intestine Large intestine
7 chr3:53774200-53789200 Weak transcription Fetal Brain Male brain
8 chr3:53774600-53785000 Weak transcription Brain Cingulate Gyrus brain
9 chr3:53774800-53807200 Strong transcription Fetal Intestine Small intestine
10 chr3:53777800-53787600 Weak transcription Duodenum Smooth Muscle Duodenum
11 chr3:53778600-53806400 Weak transcription Rectal Mucosa Donor 31 rectum
12 chr3:53778800-53783800 Weak transcription Skeletal Muscle Female skeletal muscle
13 chr3:53778800-53797000 Weak transcription Pancreas Pancrea
14 chr3:53779000-53784000 Weak transcription Fetal Thymus thymus
15 chr3:53779000-53806400 Weak transcription Rectal Mucosa Donor 29 rectum
16 chr3:53779400-53787800 Strong transcription Fetal Adrenal Gland Adrenal Gland
17 chr3:53779800-53788800 Strong transcription Brain Inferior Temporal Lobe brain
18 chr3:53780200-53787200 Weak transcription Breast Myoepithelial Primary Cells Breast
19 chr3:53780400-53785400 Enhancers Primary monocytes fromperipheralblood blood
20 chr3:53780400-53807000 Weak transcription Fetal Brain Female brain
21 chr3:53780600-53785200 Weak transcription Liver Liver
22 chr3:53781000-53784800 Enhancers Primary B cells from peripheral blood blood
23 chr3:53781200-53784600 Enhancers Primary B cells from cord blood blood
24 chr3:53781400-53782400 Enhancers GM12878-XiMat blood
25 chr3:53781400-53782600 Enhancers Adipose Nuclei Adipose
26 chr3:53781400-53783200 Enhancers iPS DF 6.9 Cell Line embryonic stem cell
27 chr3:53781400-53785000 Enhancers Primary Natural Killer cells fromperipheralblood blood
28 chr3:53781600-53782400 Enhancers Brain Hippocampus Middle brain
29 chr3:53781600-53783400 Enhancers ES-UCSF4 Cell Line embryonic stem cell
30 chr3:53781600-53783400 Weak transcription Stomach Smooth Muscle stomach
31 chr3:53781600-53784000 Weak transcription Pancreatic Islets Pancreatic Islet
32 chr3:53781600-53784800 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
33 chr3:53781800-53782200 Enhancers iPS-18 Cell Line embryonic stem cell
34 chr3:53781800-53782400 Enhancers HUES48 Cell Line embryonic stem cell
35 chr3:53781800-53782400 Enhancers iPS-20b Cell Line embryonic stem cell
36 chr3:53781800-53783000 Enhancers iPS-15b Cell Line embryonic stem cell
37 chr3:53781800-53783400 Enhancers Spleen Spleen
38 chr3:53781800-53783800 Enhancers H1 Cell Line embryonic stem cell
39 chr3:53781800-53784000 Flanking Active TSS Monocytes-CD14+_RO01746 blood
40 chr3:53781800-53784800 Enhancers HUES6 Cell Line embryonic stem cell
41 chr3:53781800-53807400 Weak transcription Brain Anterior Caudate brain
42 chr3:53782000-53782600 Genic enhancers Lung lung
43 chr3:53782000-53783200 Enhancers HUES64 Cell Line embryonic stem cell
44 chr3:53782000-53783400 Enhancers ES-I3 Cell Line embryonic stem cell
45 chr3:53782000-53783800 Enhancers H9 Cell Line embryonic stem cell

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