Variant report

Variant	rs6797032
Chromosome Location	chr3:110600113-110600114
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11914548	1.00[AMR][1000 genomes]
rs11917306	1.00[AMR][1000 genomes]
rs11922639	1.00[AMR][1000 genomes]
rs11928316	1.00[AMR][1000 genomes]
rs4317133	1.00[AMR][1000 genomes]
rs72944980	1.00[AMR][1000 genomes]
rs72944986	1.00[AMR][1000 genomes]
rs72946806	1.00[AMR][1000 genomes]
rs72946828	1.00[AMR][1000 genomes]
rs72946838	1.00[AMR][1000 genomes]
rs7434211	1.00[AMR][1000 genomes]
rs7626784	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1014199	chr3:110293896-110754155	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110594200-110607600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr3:110597000-110601200	Enhancers	Dnd41	blood
3	chr3:110597400-110600600	Enhancers	Liver	Liver
4	chr3:110599800-110600200	Enhancers	Fetal Muscle Leg	muscle
5	chr3:110599800-110600200	Enhancers	Pancreas	Pancrea
6	chr3:110599800-110600800	Enhancers	Fetal Brain Male	brain
7	chr3:110600000-110600200	Enhancers	Stomach Smooth Muscle	stomach
8	chr3:110600000-110600400	Enhancers	Fetal Brain Female	brain
9	chr3:110600000-110600600	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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