Variant report

Variant	rs72946806
Chromosome Location	chr3:110433756-110433757
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11914548	1.00[AMR][1000 genomes]
rs11915961	1.00[AMR][1000 genomes]
rs11917306	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11922639	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11925682	1.00[AMR][1000 genomes]
rs11926648	1.00[AMR][1000 genomes]
rs11928316	1.00[AMR][1000 genomes]
rs4317133	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59758035	1.00[AMR][1000 genomes]
rs6797032	1.00[AMR][1000 genomes]
rs72941111	1.00[AMR][1000 genomes]
rs72941165	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72943109	0.85[AFR][1000 genomes]
rs72944980	1.00[AMR][1000 genomes]
rs72944986	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72946828	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72946838	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72946866	0.82[AFR][1000 genomes]
rs72946867	0.82[AFR][1000 genomes]
rs72946869	0.82[AFR][1000 genomes]
rs7434211	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520365	chr3:110155172-110441165	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1001810	chr3:110158316-110522247	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1010230	chr3:110204439-110588814	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv536688	chr3:110204439-110588814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1011034	chr3:110209344-110559021	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv536689	chr3:110209344-110559021	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv1014199	chr3:110293896-110754155	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv829673	chr3:110378069-110530815	Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110428200-110434200	Enhancers	Fetal Intestine Large	intestine
2	chr3:110431400-110436200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:110431800-110439800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr3:110433000-110433800	Enhancers	Fetal Kidney	kidney
5	chr3:110433000-110435800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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