Variant report

Variant	rs6799503
Chromosome Location	chr3:135856837-135856838
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13081671	0.90[ASN][1000 genomes]
rs3905668	0.81[ASN][1000 genomes]
rs6439629	0.81[ASN][1000 genomes]
rs67109185	0.81[ASN][1000 genomes]
rs6771253	1.00[ASN][1000 genomes]
rs6786532	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135803600-135860600	Weak transcription	Esophagus	oesophagus
2	chr3:135803800-135860000	Weak transcription	NHLF	lung
3	chr3:135810400-135859800	Weak transcription	NHDF-Ad	bronchial
4	chr3:135810400-135861000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr3:135822000-135861000	Weak transcription	Ovary	ovary
6	chr3:135822800-135870000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr3:135823200-135868400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr3:135831400-135869400	Weak transcription	Psoas Muscle	Psoas
9	chr3:135831400-135874800	Weak transcription	Fetal Brain Male	brain
10	chr3:135831800-135859800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:135833000-135859800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:135833000-135860600	Weak transcription	Right Ventricle	heart
13	chr3:135833200-135860600	Weak transcription	HSMMtube	muscle
14	chr3:135843400-135866400	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr3:135843800-135873800	Weak transcription	Colonic Mucosa	Colon
16	chr3:135844400-135859800	Weak transcription	HSMM	muscle
17	chr3:135845600-135859800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr3:135845600-135860200	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr3:135845600-135860200	Weak transcription	Stomach Smooth Muscle	stomach
20	chr3:135845600-135860600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr3:135845600-135860600	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr3:135845600-135863000	Weak transcription	Fetal Muscle Trunk	muscle
23	chr3:135845600-135864000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr3:135845600-135869600	Weak transcription	Fetal Lung	lung
25	chr3:135845600-135880400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr3:135845800-135860600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr3:135845800-135860600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr3:135845800-135860600	Weak transcription	Aorta	Aorta
29	chr3:135845800-135861800	Weak transcription	Fetal Stomach	stomach
30	chr3:135845800-135864000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr3:135845800-135866000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr3:135846200-135859600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr3:135846200-135859600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr3:135846200-135859800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr3:135846200-135863600	Weak transcription	Brain Germinal Matrix	brain
36	chr3:135846200-135864200	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr3:135846400-135860000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr3:135846600-135860800	Weak transcription	Fetal Muscle Leg	muscle
39	chr3:135850800-135866000	Weak transcription	Brain Hippocampus Middle	brain
40	chr3:135852400-135868000	Weak transcription	Fetal Brain Female	brain
41	chr3:135853200-135860800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr3:135854200-135857000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr3:135854200-135860200	Weak transcription	Left Ventricle	heart
44	chr3:135854200-135861000	Weak transcription	Right Atrium	heart
45	chr3:135854200-135863600	Weak transcription	Fetal Intestine Large	intestine
46	chr3:135854200-135870000	Weak transcription	Spleen	Spleen
47	chr3:135854400-135858200	Enhancers	Dnd41	blood
48	chr3:135854400-135860000	Weak transcription	Fetal Heart	heart
49	chr3:135854400-135860200	Weak transcription	Gastric	stomach
50	chr3:135854600-135863600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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