Variant report

Variant	rs67109185
Chromosome Location	chr3:135827392-135827393
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:135822464..135824648-chr3:135825914..135828269,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10222451	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10512987	0.87[ASN][1000 genomes]
rs10512990	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12330335	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12695644	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13068210	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13079205	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13081671	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13082532	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13321220	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1393786	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1393787	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28519617	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28535121	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28669017	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34864445	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35352346	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3905668	0.82[AMR][1000 genomes]
rs56398805	0.82[AMR][1000 genomes]
rs6439629	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs67589653	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6767060	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6769762	0.81[EUR][1000 genomes]
rs6771253	0.81[ASN][1000 genomes]
rs6786582	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6792630	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6793835	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6799056	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6799320	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6799503	0.81[ASN][1000 genomes]
rs9653930	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9834966	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9848926	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9870122	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9875207	0.87[ASN][1000 genomes]
rs9881400	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135790200-135830800	Weak transcription	Psoas Muscle	Psoas
2	chr3:135803400-135848000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr3:135803600-135860600	Weak transcription	Esophagus	oesophagus
4	chr3:135803800-135832400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:135803800-135860000	Weak transcription	NHLF	lung
6	chr3:135804000-135832000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr3:135804000-135833200	Weak transcription	HMEC	breast
8	chr3:135805200-135832000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:135805200-135832800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr3:135805400-135843800	Weak transcription	NHEK	skin
11	chr3:135807400-135833200	Weak transcription	Lung	lung
12	chr3:135810000-135828800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr3:135810200-135827800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr3:135810200-135832800	Weak transcription	Brain Angular Gyrus	brain
15	chr3:135810200-135835600	Weak transcription	Brain Cingulate Gyrus	brain
16	chr3:135810200-135835800	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr3:135810400-135828800	Weak transcription	Brain Substantia Nigra	brain
18	chr3:135810400-135830800	Weak transcription	Fetal Brain Male	brain
19	chr3:135810400-135831200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr3:135810400-135832000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr3:135810400-135832000	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr3:135810400-135832800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr3:135810400-135842200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr3:135810400-135843000	Weak transcription	Gastric	stomach
25	chr3:135810400-135848000	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr3:135810400-135855400	Weak transcription	Osteobl	bone
27	chr3:135810400-135859800	Weak transcription	NHDF-Ad	bronchial
28	chr3:135810400-135861000	Weak transcription	Rectal Smooth Muscle	rectum
29	chr3:135818400-135832000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr3:135820200-135828200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr3:135820200-135834400	Strong transcription	Skeletal Muscle Female	skeletal muscle
32	chr3:135821200-135830600	Weak transcription	Fetal Heart	heart
33	chr3:135822000-135861000	Weak transcription	Ovary	ovary
34	chr3:135822400-135831000	Weak transcription	Fetal Kidney	kidney
35	chr3:135822400-135832800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr3:135822600-135831000	Weak transcription	Brain Germinal Matrix	brain
37	chr3:135822600-135832000	Weak transcription	Right Ventricle	heart
38	chr3:135822800-135830800	Weak transcription	Fetal Brain Female	brain
39	chr3:135822800-135831800	Weak transcription	Fetal Intestine Large	intestine
40	chr3:135822800-135832000	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr3:135822800-135870000	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr3:135823000-135829200	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr3:135823000-135830600	Weak transcription	Stomach Smooth Muscle	stomach
44	chr3:135823000-135831000	Weak transcription	NH-A	brain
45	chr3:135823000-135831400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr3:135823000-135832000	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr3:135823000-135832600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr3:135823200-135868400	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr3:135823600-135828200	Weak transcription	Placenta	Placenta
50	chr3:135823800-135830800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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