Variant report

Variant	rs9875207
Chromosome Location	chr3:135830138-135830139
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10512987	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13088093	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67109185	0.87[ASN][1000 genomes]
rs6774226	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6774621	0.83[CEU][hapmap];1.00[CHB][hapmap];0.84[YRI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6784219	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6787409	0.93[EUR][1000 genomes]
rs73222236	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9826146	0.87[CEU][hapmap]
rs9837224	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9843801	0.87[CEU][hapmap];1.00[CHB][hapmap]
rs9870122	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135790200-135830800	Weak transcription	Psoas Muscle	Psoas
2	chr3:135803400-135848000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr3:135803600-135860600	Weak transcription	Esophagus	oesophagus
4	chr3:135803800-135832400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:135803800-135860000	Weak transcription	NHLF	lung
6	chr3:135804000-135832000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr3:135804000-135833200	Weak transcription	HMEC	breast
8	chr3:135805200-135832000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:135805200-135832800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr3:135805400-135843800	Weak transcription	NHEK	skin
11	chr3:135807400-135833200	Weak transcription	Lung	lung
12	chr3:135810200-135832800	Weak transcription	Brain Angular Gyrus	brain
13	chr3:135810200-135835600	Weak transcription	Brain Cingulate Gyrus	brain
14	chr3:135810200-135835800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr3:135810400-135830800	Weak transcription	Fetal Brain Male	brain
16	chr3:135810400-135831200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr3:135810400-135832000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr3:135810400-135832000	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr3:135810400-135832800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr3:135810400-135842200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr3:135810400-135843000	Weak transcription	Gastric	stomach
22	chr3:135810400-135848000	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr3:135810400-135855400	Weak transcription	Osteobl	bone
24	chr3:135810400-135859800	Weak transcription	NHDF-Ad	bronchial
25	chr3:135810400-135861000	Weak transcription	Rectal Smooth Muscle	rectum
26	chr3:135818400-135832000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr3:135820200-135834400	Strong transcription	Skeletal Muscle Female	skeletal muscle
28	chr3:135821200-135830600	Weak transcription	Fetal Heart	heart
29	chr3:135822000-135861000	Weak transcription	Ovary	ovary
30	chr3:135822400-135831000	Weak transcription	Fetal Kidney	kidney
31	chr3:135822400-135832800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr3:135822600-135831000	Weak transcription	Brain Germinal Matrix	brain
33	chr3:135822600-135832000	Weak transcription	Right Ventricle	heart
34	chr3:135822800-135830800	Weak transcription	Fetal Brain Female	brain
35	chr3:135822800-135831800	Weak transcription	Fetal Intestine Large	intestine
36	chr3:135822800-135832000	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr3:135822800-135870000	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr3:135823000-135830600	Weak transcription	Stomach Smooth Muscle	stomach
39	chr3:135823000-135831000	Weak transcription	NH-A	brain
40	chr3:135823000-135831400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr3:135823000-135832000	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr3:135823000-135832600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr3:135823200-135868400	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr3:135823800-135830800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr3:135824200-135834600	Weak transcription	Adipose Nuclei	Adipose
46	chr3:135824400-135831400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr3:135824400-135832000	Weak transcription	Fetal Lung	lung
48	chr3:135824400-135832400	Weak transcription	HSMMtube	muscle
49	chr3:135824400-135845000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr3:135824400-135854400	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links