Variant report

Variant	rs6784219
Chromosome Location	chr3:135834842-135834843
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10512987	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12695644	0.80[ASN][1000 genomes]
rs13088093	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6774226	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6774621	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6787409	0.91[EUR][1000 genomes]
rs73222236	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9837224	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9875207	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135803400-135848000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr3:135803600-135860600	Weak transcription	Esophagus	oesophagus
3	chr3:135803800-135860000	Weak transcription	NHLF	lung
4	chr3:135805400-135843800	Weak transcription	NHEK	skin
5	chr3:135810200-135835600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr3:135810200-135835800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr3:135810400-135842200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr3:135810400-135843000	Weak transcription	Gastric	stomach
9	chr3:135810400-135848000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr3:135810400-135855400	Weak transcription	Osteobl	bone
11	chr3:135810400-135859800	Weak transcription	NHDF-Ad	bronchial
12	chr3:135810400-135861000	Weak transcription	Rectal Smooth Muscle	rectum
13	chr3:135822000-135861000	Weak transcription	Ovary	ovary
14	chr3:135822800-135870000	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr3:135823200-135868400	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr3:135824400-135845000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr3:135824400-135854400	Weak transcription	Pancreas	Pancrea
18	chr3:135825200-135846800	Weak transcription	Colon Smooth Muscle	Colon
19	chr3:135825400-135845800	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr3:135829200-135844600	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr3:135829400-135838600	Weak transcription	Brain Hippocampus Middle	brain
22	chr3:135829600-135845600	Weak transcription	Brain Substantia Nigra	brain
23	chr3:135829600-135846800	Weak transcription	Brain Anterior Caudate	brain
24	chr3:135830000-135845000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr3:135831400-135869400	Weak transcription	Psoas Muscle	Psoas
26	chr3:135831400-135874800	Weak transcription	Fetal Brain Male	brain
27	chr3:135831800-135859800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr3:135832400-135844800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr3:135832600-135844800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr3:135833000-135853200	Weak transcription	Fetal Heart	heart
31	chr3:135833000-135859800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr3:135833000-135860600	Weak transcription	Right Ventricle	heart
33	chr3:135833200-135845000	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr3:135833200-135860600	Weak transcription	HSMMtube	muscle
35	chr3:135833600-135835000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr3:135833600-135839800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr3:135833600-135839800	Weak transcription	Stomach Smooth Muscle	stomach
38	chr3:135833600-135843000	Weak transcription	Aorta	Aorta
39	chr3:135833600-135845000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr3:135833800-135839400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr3:135833800-135841000	Weak transcription	HSMM	muscle
42	chr3:135833800-135844200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr3:135833800-135844800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr3:135833800-135845000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr3:135833800-135845000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr3:135833800-135845200	Weak transcription	Fetal Lung	lung
47	chr3:135834000-135838600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr3:135834000-135839400	Weak transcription	Dnd41	blood
49	chr3:135834000-135843000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr3:135834000-135843000	Weak transcription	Fetal Stomach	stomach

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