Variant report

Variant	rs73222236
Chromosome Location	chr3:135888642-135888643
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:135885984..135890346-chr3:135913669..135917315,5	MCF-7	breast:
2	chr3:135887141..135889698-chr3:135896091..135898192,2	K562	blood:
3	chr3:135888357..135890199-chr3:135968002..135970142,2	MCF-7	breast:
4	chr3:135868668..135870435-chr3:135888609..135890822,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174579	Chromatin interaction
ENSG00000114054	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10512987	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13081671	0.87[ASN][1000 genomes]
rs13088093	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6774226	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6774621	0.82[EUR][1000 genomes]
rs6784219	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6787409	0.85[EUR][1000 genomes]
rs9837224	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9875207	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135862000-135904800	Weak transcription	Hela-S3	cervix
2	chr3:135870800-135895200	Weak transcription	Fetal Intestine Small	intestine
3	chr3:135871000-135897600	Weak transcription	Aorta	Aorta
4	chr3:135871200-135905000	Weak transcription	Fetal Stomach	stomach
5	chr3:135872200-135891400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:135872800-135903600	Weak transcription	Thymus	Thymus
7	chr3:135873600-135889800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr3:135874800-135890200	Weak transcription	Spleen	Spleen
9	chr3:135874800-135897600	Weak transcription	Gastric	stomach
10	chr3:135876400-135890200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr3:135879000-135890000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr3:135880000-135906600	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr3:135880200-135889000	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr3:135881200-135889600	Weak transcription	Osteobl	bone
15	chr3:135881400-135890200	Weak transcription	Lung	lung
16	chr3:135882200-135889000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr3:135882600-135889600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr3:135882600-135890000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr3:135882800-135890200	Weak transcription	Esophagus	oesophagus
20	chr3:135882800-135890200	Weak transcription	Right Atrium	heart
21	chr3:135882800-135893000	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr3:135882800-135905200	Weak transcription	Fetal Muscle Leg	muscle
23	chr3:135883200-135890000	Weak transcription	Adipose Nuclei	Adipose
24	chr3:135883400-135889400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr3:135883400-135889600	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr3:135883400-135889600	Weak transcription	HUVEC	blood vessel
27	chr3:135883400-135889800	Weak transcription	Brain Angular Gyrus	brain
28	chr3:135883400-135890000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr3:135883400-135892400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr3:135883400-135901800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr3:135883800-135890200	Weak transcription	Brain Anterior Caudate	brain
32	chr3:135883800-135901200	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr3:135884000-135889000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr3:135884000-135890200	Weak transcription	Left Ventricle	heart
35	chr3:135884000-135891600	Weak transcription	Psoas Muscle	Psoas
36	chr3:135884200-135890200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr3:135885600-135889400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr3:135885600-135889600	Weak transcription	Primary hematopoietic stem cells	blood
39	chr3:135885600-135889600	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr3:135885600-135889600	Weak transcription	Small Intestine	intestine
41	chr3:135885600-135889800	Weak transcription	Brain Hippocampus Middle	brain
42	chr3:135885600-135890200	Weak transcription	Pancreas	Pancrea
43	chr3:135885600-135890200	Weak transcription	Right Ventricle	heart
44	chr3:135885600-135890200	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr3:135885600-135890200	Weak transcription	HSMMtube	muscle
46	chr3:135885600-135897800	Weak transcription	Fetal Thymus	thymus
47	chr3:135885800-135888800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr3:135885800-135889600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr3:135885800-135889600	Weak transcription	Rectal Smooth Muscle	rectum
50	chr3:135885800-135889800	Weak transcription	Skeletal Muscle Male	skeletal muscle

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