Variant report

Variant	rs9826146
Chromosome Location	chr3:135983089-135983090
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:135967759..135970710-chr3:135979580..135983206,3	K562	blood:
2	chr3:135914799..135916936-chr3:135981724..135984438,2	MCF-7	breast:
3	chr3:135978278..135980985-chr3:135981419..135984016,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174579	Chromatin interaction
ENSG00000114054	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10512987	0.86[CEU][hapmap]
rs1279425	0.87[YRI][hapmap]
rs28812220	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34523567	0.88[EUR][1000 genomes]
rs35058853	0.93[EUR][1000 genomes]
rs35375192	1.00[CEU][hapmap]
rs3755636	0.87[YRI][hapmap]
rs4678428	0.86[YRI][hapmap]
rs5026242	0.83[EUR][1000 genomes]
rs548288	0.86[YRI][hapmap]
rs55797013	0.84[AFR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs576771	0.86[YRI][hapmap]
rs6439638	1.00[CEU][hapmap];0.85[YRI][hapmap];0.92[EUR][1000 genomes]
rs67214626	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6776841	1.00[CEU][hapmap];0.93[YRI][hapmap];0.93[EUR][1000 genomes]
rs6783337	0.95[CEU][hapmap];0.93[YRI][hapmap];0.88[EUR][1000 genomes]
rs6785225	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6796523	0.83[ASN][1000 genomes]
rs6804194	1.00[CEU][hapmap]
rs7620314	0.81[CEU][hapmap]
rs7622833	0.93[EUR][1000 genomes]
rs9811261	0.85[EUR][1000 genomes]
rs9811490	0.89[EUR][1000 genomes]
rs9812513	1.00[CEU][hapmap];0.90[YRI][hapmap];0.93[EUR][1000 genomes]
rs9819496	0.80[EUR][1000 genomes]
rs9831321	1.00[CEU][hapmap];0.89[YRI][hapmap]
rs9833162	1.00[CEU][hapmap];0.93[YRI][hapmap];0.93[EUR][1000 genomes]
rs9843348	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9843801	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9853387	1.00[CEU][hapmap];0.96[YRI][hapmap];0.93[EUR][1000 genomes]
rs9860801	1.00[CEU][hapmap];0.96[YRI][hapmap];0.90[EUR][1000 genomes]
rs9868120	1.00[CEU][hapmap];0.89[YRI][hapmap]
rs9872326	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9875207	0.87[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv508246	chr3:135922023-136038622	Active TSS Enhancers Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv948461	chr3:135969755-136349636	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135970200-135984000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:135970200-135996000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:135970400-135995400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:135970600-135985200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr3:135970600-135985200	Weak transcription	HMEC	breast
6	chr3:135970600-135987600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr3:135970600-135998800	Weak transcription	Fetal Brain Male	brain
8	chr3:135970600-135999200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:135970600-135999200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr3:135970600-136039400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr3:135970800-135986000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr3:135970800-135995400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr3:135970800-135998000	Weak transcription	Hela-S3	cervix
14	chr3:135973400-135984200	Strong transcription	Fetal Stomach	stomach
15	chr3:135974000-135983400	Strong transcription	Fetal Thymus	thymus
16	chr3:135974000-135986800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr3:135974000-135986800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr3:135974000-135989400	Strong transcription	Dnd41	blood
19	chr3:135974200-135983200	Strong transcription	Stomach Smooth Muscle	stomach
20	chr3:135974200-135983400	Strong transcription	Fetal Muscle Leg	muscle
21	chr3:135974200-135989600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr3:135974200-135989600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr3:135974400-135983200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
24	chr3:135974400-135983600	Strong transcription	Fetal Muscle Trunk	muscle
25	chr3:135974400-135984600	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr3:135974400-135984600	Strong transcription	Liver	Liver
27	chr3:135974400-135986400	Strong transcription	HUES48 Cell Line	embryonic stem cell
28	chr3:135974400-135989600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr3:135974600-135983400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr3:135974600-135985200	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr3:135974600-135986400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr3:135974800-135983400	Strong transcription	Skeletal Muscle Female	skeletal muscle
33	chr3:135974800-135986200	Strong transcription	Placenta	Placenta
34	chr3:135974800-135997800	Weak transcription	Stomach Mucosa	stomach
35	chr3:135975000-135983200	Strong transcription	Adipose Nuclei	Adipose
36	chr3:135975000-135983400	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr3:135975000-135984600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr3:135975200-135983600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr3:135975200-135985200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr3:135975200-135987800	Strong transcription	Fetal Intestine Large	intestine
41	chr3:135975800-135987200	Weak transcription	Thymus	Thymus
42	chr3:135976200-135996000	Weak transcription	Pancreas	Pancrea
43	chr3:135976200-135999400	Weak transcription	Rectal Smooth Muscle	rectum
44	chr3:135976200-136012400	Weak transcription	NHLF	lung
45	chr3:135976200-136016400	Weak transcription	Colonic Mucosa	Colon
46	chr3:135976200-136021600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr3:135976400-135989000	Weak transcription	Primary hematopoietic stem cells	blood
48	chr3:135976800-135983200	Strong transcription	Duodenum Smooth Muscle	Duodenum
49	chr3:135977400-135995600	Weak transcription	Fetal Lung	lung
50	chr3:135977400-135996000	Weak transcription	K562	blood

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