Variant report

Variant	rs6783337
Chromosome Location	chr3:136052737-136052738
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:135913296..135916091-chr3:136051833..136053446,2	MCF-7	breast:
2	chr3:136050884..136053004-chr3:136057100..136060594,3	K562	blood:
3	chr3:136033614..136036060-chr3:136051639..136053164,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174579	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10513002	1.00[CHB][hapmap]
rs10935178	1.00[CHB][hapmap]
rs12330258	0.87[AFR][1000 genomes]
rs1279425	0.80[YRI][hapmap]
rs16843879	1.00[CHB][hapmap]
rs16843978	1.00[CHB][hapmap]
rs16843991	0.91[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap]
rs17199978	1.00[CHB][hapmap]
rs17266364	1.00[CHB][hapmap]
rs28396702	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28812220	0.88[EUR][1000 genomes]
rs34165586	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34523567	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35058853	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35375192	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35644083	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[YRI][hapmap]
rs3755636	0.80[YRI][hapmap]
rs3872588	1.00[CHB][hapmap]
rs5026242	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55797013	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56251259	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6439638	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6439642	0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap]
rs67214626	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6766450	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6773495	1.00[CHB][hapmap]
rs6773604	1.00[CHB][hapmap]
rs6776841	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6785225	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6800570	1.00[CHB][hapmap]
rs6804194	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7620314	0.81[CEU][hapmap]
rs7622833	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7650075	1.00[CHB][hapmap]
rs9809184	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9811261	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9811490	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9812319	1.00[CEU][hapmap];0.81[YRI][hapmap]
rs9812513	0.95[CEU][hapmap];0.90[YRI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9819496	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9826146	0.95[CEU][hapmap];0.93[YRI][hapmap];0.88[EUR][1000 genomes]
rs9831321	1.00[CEU][hapmap];0.89[YRI][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9833162	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9843348	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9843801	0.95[CEU][hapmap];0.93[YRI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9850383	0.85[AMR][1000 genomes]
rs9853387	1.00[CEU][hapmap];0.96[YRI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9860801	1.00[CEU][hapmap];0.96[YRI][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9868120	1.00[CEU][hapmap];0.89[YRI][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9872326	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv948461	chr3:135969755-136349636	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv4025	chr3:136017458-136065622	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv877519	chr3:136035737-136279390	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135999800-136061200	Weak transcription	Hela-S3	cervix
2	chr3:136032800-136055400	Weak transcription	HUVEC	blood vessel
3	chr3:136039000-136072400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:136039200-136062400	Weak transcription	Fetal Heart	heart
5	chr3:136040400-136062800	Weak transcription	Stomach Mucosa	stomach
6	chr3:136040600-136061400	Weak transcription	Small Intestine	intestine
7	chr3:136041000-136052800	Weak transcription	Fetal Kidney	kidney
8	chr3:136042400-136058200	Weak transcription	Psoas Muscle	Psoas
9	chr3:136042400-136078800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr3:136042600-136053200	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr3:136042600-136072600	Strong transcription	Dnd41	blood
12	chr3:136043400-136098600	Weak transcription	Fetal Brain Male	brain
13	chr3:136043600-136082000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr3:136043800-136070400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr3:136044800-136054600	Strong transcription	Brain Inferior Temporal Lobe	brain
16	chr3:136045200-136060800	Strong transcription	Liver	Liver
17	chr3:136045200-136062000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr3:136045600-136079200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr3:136046200-136060000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr3:136047600-136098000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr3:136047800-136068200	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr3:136047800-136074800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr3:136048000-136054200	Weak transcription	HMEC	breast
24	chr3:136048200-136052800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr3:136048200-136053200	Weak transcription	Colon Smooth Muscle	Colon
26	chr3:136048200-136060200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr3:136048400-136062800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr3:136048800-136052800	Weak transcription	Primary B cells from peripheral blood	blood
29	chr3:136048800-136053000	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr3:136048800-136053200	Weak transcription	Right Ventricle	heart
31	chr3:136048800-136062600	Weak transcription	NHEK	skin
32	chr3:136049000-136056000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr3:136049000-136062800	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr3:136050800-136054200	Strong transcription	Brain Hippocampus Middle	brain
35	chr3:136050800-136062800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr3:136051000-136054800	Strong transcription	Cortex derived primary cultured neurospheres	brain
37	chr3:136051000-136062200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr3:136051000-136062400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr3:136051000-136062800	Strong transcription	Adipose Nuclei	Adipose
40	chr3:136051000-136063600	Strong transcription	Fetal Thymus	thymus
41	chr3:136051000-136069800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr3:136051200-136052800	Enhancers	NHDF-Ad	bronchial
43	chr3:136051200-136063600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr3:136051400-136053400	Strong transcription	HepG2	liver
45	chr3:136051400-136054600	Strong transcription	Brain Angular Gyrus	brain
46	chr3:136051400-136055000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr3:136051600-136053000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr3:136051600-136054600	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr3:136051600-136055400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr3:136051600-136055600	Strong transcription	Fetal Intestine Small	intestine

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