Variant report

Variant	rs10935178
Chromosome Location	chr3:135893295-135893296
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:135860291..135862678-chr3:135891863..135894559,2	MCF-7	breast:
2	chr3:135892886..135895587-chr3:135912549..135916155,3	MCF-7	breast:
3	chr3:135892696..135894968-chr3:135897212..135899768,3	MCF-7	breast:
4	chr3:135890394..135895932-chr3:135912281..135916097,6	MCF-7	breast:
5	chr3:135881427..135883402-chr3:135892260..135894929,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174579	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10513002	1.00[CHB][hapmap]
rs16843879	1.00[CHB][hapmap];0.86[GIH][hapmap];0.84[MKK][hapmap]
rs17199978	1.00[CHB][hapmap]
rs3872588	1.00[CHB][hapmap];0.83[AFR][1000 genomes]
rs59747718	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60149787	1.00[ASN][1000 genomes]
rs60288484	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6439638	1.00[CHB][hapmap]
rs6771887	1.00[ASN][1000 genomes]
rs6776841	1.00[CHB][hapmap]
rs6781817	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[GIH][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6783337	1.00[CHB][hapmap]
rs6800570	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7619852	1.00[ASN][1000 genomes]
rs7634492	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[GIH][hapmap];1.00[ASN][1000 genomes]
rs7650075	1.00[CHB][hapmap];0.81[MKK][hapmap]
rs9833162	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10935178	IL20RB	cis	Artery Tibial	GTEx

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135862000-135904800	Weak transcription	Hela-S3	cervix
2	chr3:135870800-135895200	Weak transcription	Fetal Intestine Small	intestine
3	chr3:135871000-135897600	Weak transcription	Aorta	Aorta
4	chr3:135871200-135905000	Weak transcription	Fetal Stomach	stomach
5	chr3:135872800-135903600	Weak transcription	Thymus	Thymus
6	chr3:135874800-135897600	Weak transcription	Gastric	stomach
7	chr3:135880000-135906600	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr3:135882800-135905200	Weak transcription	Fetal Muscle Leg	muscle
9	chr3:135883400-135901800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr3:135883800-135901200	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr3:135885600-135897800	Weak transcription	Fetal Thymus	thymus
12	chr3:135885800-135893400	Weak transcription	Ovary	ovary
13	chr3:135888800-135899400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr3:135889200-135905000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr3:135889400-135893800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr3:135889400-135901000	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr3:135889400-135907000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr3:135889400-135910400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr3:135889600-135893600	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr3:135889600-135893800	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr3:135889600-135894600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr3:135889800-135894000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr3:135889800-135905000	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr3:135890000-135893600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr3:135890000-135903800	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr3:135890200-135894600	Enhancers	Primary B cells from peripheral blood	blood
27	chr3:135890400-135893600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr3:135890400-135897800	Weak transcription	Dnd41	blood
29	chr3:135890400-135898600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr3:135890400-135905000	Weak transcription	NHDF-Ad	bronchial
31	chr3:135890400-135909600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
32	chr3:135891000-135893800	Weak transcription	Esophagus	oesophagus
33	chr3:135891000-135893800	Weak transcription	Pancreas	Pancrea
34	chr3:135891000-135894200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr3:135891000-135894200	Weak transcription	Lung	lung
36	chr3:135891000-135895000	Weak transcription	Left Ventricle	heart
37	chr3:135891000-135897600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr3:135891000-135898200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr3:135891000-135901200	Weak transcription	Primary hematopoietic stem cells	blood
40	chr3:135891000-135901200	Weak transcription	NH-A	brain
41	chr3:135891000-135905000	Weak transcription	Brain Substantia Nigra	brain
42	chr3:135891400-135894400	Weak transcription	Spleen	Spleen
43	chr3:135891400-135895000	Weak transcription	Right Ventricle	heart
44	chr3:135891400-135897800	Weak transcription	Primary B cells from cord blood	blood
45	chr3:135891400-135904200	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr3:135891600-135898400	Weak transcription	GM12878-XiMat	blood
47	chr3:135891800-135893600	Enhancers	Rectal Mucosa Donor 31	rectum
48	chr3:135891800-135893800	Enhancers	Duodenum Mucosa	Duodenum
49	chr3:135891800-135895400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr3:135892000-135893400	Weak transcription	Psoas Muscle	Psoas

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