Variant report

Variant	rs6781817
Chromosome Location	chr3:135842507-135842508
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10935178	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[GIH][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16843879	1.00[CHB][hapmap];0.93[GIH][hapmap]
rs3872588	1.00[CHB][hapmap];0.88[EUR][1000 genomes]
rs59747718	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60149787	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60288484	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6771887	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6776841	1.00[CHB][hapmap]
rs6800570	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7619852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7634492	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9833162	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6781817	IL20RB	cis	Artery Tibial	GTEx

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135803400-135848000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr3:135803600-135860600	Weak transcription	Esophagus	oesophagus
3	chr3:135803800-135860000	Weak transcription	NHLF	lung
4	chr3:135805400-135843800	Weak transcription	NHEK	skin
5	chr3:135810400-135843000	Weak transcription	Gastric	stomach
6	chr3:135810400-135848000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr3:135810400-135855400	Weak transcription	Osteobl	bone
8	chr3:135810400-135859800	Weak transcription	NHDF-Ad	bronchial
9	chr3:135810400-135861000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr3:135822000-135861000	Weak transcription	Ovary	ovary
11	chr3:135822800-135870000	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr3:135823200-135868400	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr3:135824400-135845000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr3:135824400-135854400	Weak transcription	Pancreas	Pancrea
15	chr3:135825200-135846800	Weak transcription	Colon Smooth Muscle	Colon
16	chr3:135825400-135845800	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr3:135829200-135844600	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr3:135829600-135845600	Weak transcription	Brain Substantia Nigra	brain
19	chr3:135829600-135846800	Weak transcription	Brain Anterior Caudate	brain
20	chr3:135830000-135845000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr3:135831400-135869400	Weak transcription	Psoas Muscle	Psoas
22	chr3:135831400-135874800	Weak transcription	Fetal Brain Male	brain
23	chr3:135831800-135859800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr3:135832400-135844800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr3:135832600-135844800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr3:135833000-135853200	Weak transcription	Fetal Heart	heart
27	chr3:135833000-135859800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr3:135833000-135860600	Weak transcription	Right Ventricle	heart
29	chr3:135833200-135845000	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr3:135833200-135860600	Weak transcription	HSMMtube	muscle
31	chr3:135833600-135843000	Weak transcription	Aorta	Aorta
32	chr3:135833600-135845000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr3:135833800-135844200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr3:135833800-135844800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr3:135833800-135845000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr3:135833800-135845000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr3:135833800-135845200	Weak transcription	Fetal Lung	lung
38	chr3:135834000-135843000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr3:135834000-135843000	Weak transcription	Fetal Stomach	stomach
40	chr3:135834000-135844400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr3:135834000-135844800	Weak transcription	Fetal Muscle Leg	muscle
42	chr3:135834000-135845000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr3:135834200-135842800	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr3:135834200-135843000	Weak transcription	Fetal Intestine Small	intestine
45	chr3:135834200-135844400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr3:135834200-135846400	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr3:135834400-135844000	Weak transcription	Fetal Muscle Trunk	muscle
48	chr3:135834400-135844800	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr3:135834800-135845200	Weak transcription	Left Ventricle	heart
50	chr3:135838800-135845000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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