Variant report

Variant	rs6800570
Chromosome Location	chr3:135909962-135909963
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:135909566..135911641-chr3:135968444..135970948,2	MCF-7	breast:
2	chr3:135870333..135872175-chr3:135909037..135911378,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000114054	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10513002	1.00[CHB][hapmap]
rs10935178	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16843879	1.00[CHB][hapmap];0.93[GIH][hapmap];0.84[MKK][hapmap]
rs16843978	1.00[CHB][hapmap]
rs17199978	1.00[CHB][hapmap]
rs17266364	1.00[CHB][hapmap]
rs3872588	1.00[CHB][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59747718	0.94[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60149787	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60288484	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6439638	1.00[CHB][hapmap]
rs6771887	1.00[ASN][1000 genomes]
rs6776841	1.00[CHB][hapmap]
rs6781817	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6783337	1.00[CHB][hapmap]
rs7619852	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7634492	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.92[TSI][hapmap];1.00[ASN][1000 genomes]
rs7650075	1.00[CHB][hapmap];0.81[MKK][hapmap]
rs9833162	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6800570	IL20RB	cis	Artery Tibial	GTEx

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135889400-135910400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
2	chr3:135893600-135910400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr3:135897600-135911000	Enhancers	Primary B cells from peripheral blood	blood
4	chr3:135898000-135910200	Weak transcription	HSMM	muscle
5	chr3:135900800-135910400	Enhancers	Liver	Liver
6	chr3:135901000-135910400	Enhancers	HepG2	liver
7	chr3:135903400-135911200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr3:135904400-135910400	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr3:135905600-135910600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr3:135905800-135910400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr3:135906000-135910600	Weak transcription	NH-A	brain
12	chr3:135906000-135911200	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr3:135906200-135910000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr3:135906200-135910400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr3:135906200-135910400	Weak transcription	NHDF-Ad	bronchial
16	chr3:135907000-135910400	Weak transcription	Fetal Intestine Large	intestine
17	chr3:135907000-135910600	Enhancers	Lung	lung
18	chr3:135907200-135912400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr3:135907400-135910000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr3:135907400-135910400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr3:135907400-135914600	Transcr. at gene 5' and 3'	Dnd41	blood
22	chr3:135907600-135910200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr3:135907600-135910200	Weak transcription	Fetal Muscle Leg	muscle
24	chr3:135907600-135910200	Weak transcription	Fetal Stomach	stomach
25	chr3:135907600-135910200	Weak transcription	Spleen	Spleen
26	chr3:135907600-135910600	Weak transcription	A549	lung
27	chr3:135907600-135911200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr3:135907600-135911400	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr3:135907800-135910200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr3:135907800-135910200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr3:135907800-135910200	Weak transcription	Right Atrium	heart
32	chr3:135907800-135910200	Weak transcription	Stomach Mucosa	stomach
33	chr3:135907800-135910400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr3:135907800-135910400	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr3:135907800-135910400	Weak transcription	NHLF	lung
36	chr3:135907800-135910400	Weak transcription	Osteobl	bone
37	chr3:135907800-135911400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
38	chr3:135907800-135911600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr3:135908200-135910200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr3:135908200-135910200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr3:135908200-135910400	Weak transcription	Primary B cells from cord blood	blood
42	chr3:135908200-135912200	Weak transcription	Gastric	stomach
43	chr3:135908200-135912600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr3:135908400-135910000	Enhancers	Duodenum Mucosa	Duodenum
45	chr3:135908400-135910200	Enhancers	Brain Hippocampus Middle	brain
46	chr3:135908400-135910200	Weak transcription	Pancreas	Pancrea
47	chr3:135908400-135912000	Weak transcription	Fetal Muscle Trunk	muscle
48	chr3:135908600-135910400	Enhancers	Brain Angular Gyrus	brain
49	chr3:135908600-135910800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
50	chr3:135908800-135910000	Enhancers	Hela-S3	cervix

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