The 2.0 version of rSNPBase

Variant report

Variant rs7619852
Chromosome Location chr3:135844311-135844312
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:60 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:135803400-135848000 Weak transcription Placenta Amnion Placenta Amnion
2 chr3:135803600-135860600 Weak transcription Esophagus oesophagus
3 chr3:135803800-135860000 Weak transcription NHLF lung
4 chr3:135810400-135848000 Weak transcription Sigmoid Colon Sigmoid Colon
5 chr3:135810400-135855400 Weak transcription Osteobl bone
6 chr3:135810400-135859800 Weak transcription NHDF-Ad bronchial
7 chr3:135810400-135861000 Weak transcription Rectal Smooth Muscle rectum
8 chr3:135822000-135861000 Weak transcription Ovary ovary
9 chr3:135822800-135870000 Weak transcription Rectal Mucosa Donor 31 rectum
10 chr3:135823200-135868400 Weak transcription Rectal Mucosa Donor 29 rectum
11 chr3:135824400-135845000 Weak transcription Fetal Adrenal Gland Adrenal Gland
12 chr3:135824400-135854400 Weak transcription Pancreas Pancrea
13 chr3:135825200-135846800 Weak transcription Colon Smooth Muscle Colon
14 chr3:135825400-135845800 Weak transcription Duodenum Smooth Muscle Duodenum
15 chr3:135829200-135844600 Weak transcription Muscle Satellite Cultured Cells --
16 chr3:135829600-135845600 Weak transcription Brain Substantia Nigra brain
17 chr3:135829600-135846800 Weak transcription Brain Anterior Caudate brain
18 chr3:135830000-135845000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
19 chr3:135831400-135869400 Weak transcription Psoas Muscle Psoas
20 chr3:135831400-135874800 Weak transcription Fetal Brain Male brain
21 chr3:135831800-135859800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
22 chr3:135832400-135844800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
23 chr3:135832600-135844800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
24 chr3:135833000-135853200 Weak transcription Fetal Heart heart
25 chr3:135833000-135859800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
26 chr3:135833000-135860600 Weak transcription Right Ventricle heart
27 chr3:135833200-135845000 Weak transcription Cortex derived primary cultured neurospheres brain
28 chr3:135833200-135860600 Weak transcription HSMMtube muscle
29 chr3:135833600-135845000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
30 chr3:135833800-135844800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
31 chr3:135833800-135845000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
32 chr3:135833800-135845000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
33 chr3:135833800-135845200 Weak transcription Fetal Lung lung
34 chr3:135834000-135844400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
35 chr3:135834000-135844800 Weak transcription Fetal Muscle Leg muscle
36 chr3:135834000-135845000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
37 chr3:135834200-135844400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
38 chr3:135834200-135846400 Weak transcription H1 Cell Line embryonic stem cell
39 chr3:135834400-135844800 Weak transcription Skeletal Muscle Female skeletal muscle
40 chr3:135834800-135845200 Weak transcription Left Ventricle heart
41 chr3:135838800-135845000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
42 chr3:135839000-135845000 Weak transcription Brain Hippocampus Middle brain
43 chr3:135839400-135844800 Weak transcription Brain Germinal Matrix brain
44 chr3:135839600-135844800 Weak transcription Fetal Brain Female brain
45 chr3:135840400-135844800 Weak transcription Stomach Smooth Muscle stomach
46 chr3:135840600-135845400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
47 chr3:135841000-135844400 Strong transcription HSMM muscle
48 chr3:135843000-135845000 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
49 chr3:135843000-135845200 Strong transcription Gastric stomach
50 chr3:135843200-135845000 Weak transcription Breast Myoepithelial Primary Cells Breast

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Last update: Aug 31, 2015