Variant report

Variant	rs3872588
Chromosome Location	chr3:135926656-135926657
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10513002	1.00[CHB][hapmap]
rs10935178	1.00[CHB][hapmap];0.83[AFR][1000 genomes]
rs16843879	1.00[CHB][hapmap]
rs16843978	1.00[CHB][hapmap]
rs17199978	1.00[CHB][hapmap]
rs17266364	1.00[CHB][hapmap]
rs59747718	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs60149787	0.84[EUR][1000 genomes]
rs60288484	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6439638	1.00[CHB][hapmap]
rs6776841	1.00[CHB][hapmap]
rs6781817	1.00[CHB][hapmap];0.88[EUR][1000 genomes]
rs6783337	1.00[CHB][hapmap]
rs6800570	1.00[CHB][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7619852	0.87[EUR][1000 genomes]
rs7634492	1.00[CHB][hapmap]
rs7650075	1.00[CHB][hapmap]
rs9833162	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv508246	chr3:135922023-136038622	Active TSS Enhancers Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3872588	IL20RB	cis	Artery Tibial	GTEx

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135923400-135931400	Weak transcription	HepG2	liver
2	chr3:135924400-135927000	Enhancers	Brain Germinal Matrix	brain
3	chr3:135924800-135927200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr3:135926000-135927000	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr3:135926200-135927000	Enhancers	Brain Substantia Nigra	brain
6	chr3:135926400-135926800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr3:135926400-135926800	Flanking Active TSS	Brain Anterior Caudate	brain
8	chr3:135926400-135926800	Flanking Active TSS	Brain Hippocampus Middle	brain
9	chr3:135926600-135927000	Enhancers	Brain Angular Gyrus	brain
10	chr3:135926600-135927000	Enhancers	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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