Variant report

Variant	rs9811261
Chromosome Location	chr3:136098559-136098560
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12330800	0.82[AMR][1000 genomes]
rs16843991	0.82[EUR][1000 genomes]
rs28396702	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28812220	0.85[EUR][1000 genomes]
rs34165586	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34523567	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35058853	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35375192	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs5026242	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55797013	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56251259	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6439638	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6439642	0.82[EUR][1000 genomes]
rs67214626	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6766450	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6776841	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6783337	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6785225	0.84[EUR][1000 genomes]
rs6804194	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7622833	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9809184	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9811490	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9812513	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9819496	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9826146	0.85[EUR][1000 genomes]
rs9831321	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9833162	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9843348	0.87[EUR][1000 genomes]
rs9843801	0.86[EUR][1000 genomes]
rs9850383	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9853387	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9860801	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9866535	0.82[EUR][1000 genomes]
rs9868120	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9872326	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv948461	chr3:135969755-136349636	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv877519	chr3:136035737-136279390	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv877520	chr3:136056861-136310985	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv877521	chr3:136069286-136310985	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv877522	chr3:136088038-136241028	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv877523	chr3:136088038-136310985	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	nsv520012	chr3:136088038-136314119	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
9	nsv238089	chr3:136098002-136105895	Weak transcription Strong transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136043400-136098600	Weak transcription	Fetal Brain Male	brain
2	chr3:136054600-136172000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr3:136055600-136100800	Weak transcription	Spleen	Spleen
4	chr3:136063400-136139000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr3:136063400-136139000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr3:136063600-136105600	Weak transcription	Gastric	stomach
7	chr3:136063600-136110600	Weak transcription	Small Intestine	intestine
8	chr3:136063600-136139200	Weak transcription	Pancreas	Pancrea
9	chr3:136067600-136109000	Weak transcription	HUVEC	blood vessel
10	chr3:136068600-136103800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr3:136069400-136121200	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr3:136069600-136107400	Weak transcription	Brain Cingulate Gyrus	brain
13	chr3:136069600-136138800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr3:136069600-136139400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr3:136069800-136106600	Weak transcription	Stomach Smooth Muscle	stomach
16	chr3:136069800-136118800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr3:136069800-136159600	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr3:136070600-136101000	Weak transcription	Right Ventricle	heart
19	chr3:136070600-136105800	Weak transcription	Psoas Muscle	Psoas
20	chr3:136070800-136099600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr3:136070800-136112200	Weak transcription	Aorta	Aorta
22	chr3:136070800-136121400	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr3:136072600-136098800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr3:136072800-136100400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr3:136075000-136137800	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr3:136075400-136108000	Weak transcription	Fetal Brain Female	brain
27	chr3:136075600-136105800	Weak transcription	Ovary	ovary
28	chr3:136075800-136099000	Weak transcription	Fetal Muscle Leg	muscle
29	chr3:136075800-136160200	Weak transcription	Brain Germinal Matrix	brain
30	chr3:136079400-136174200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr3:136081200-136118800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr3:136083200-136111400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr3:136084400-136123200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr3:136085400-136104200	Weak transcription	GM12878-XiMat	blood
35	chr3:136085600-136100000	Weak transcription	Osteobl	bone
36	chr3:136085600-136116400	Weak transcription	Fetal Intestine Large	intestine
37	chr3:136085800-136099400	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr3:136085800-136100000	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr3:136085800-136100400	Weak transcription	Brain Hippocampus Middle	brain
40	chr3:136085800-136100800	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr3:136085800-136116400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr3:136085800-136139200	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr3:136085800-136174800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr3:136086000-136112200	Weak transcription	Liver	Liver
45	chr3:136086000-136128400	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr3:136086000-136136000	Weak transcription	HSMM	muscle
47	chr3:136086200-136174800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr3:136086400-136116800	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr3:136088200-136106400	Weak transcription	Primary B cells from peripheral blood	blood
50	chr3:136088400-136121200	Weak transcription	Thymus	Thymus

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