Variant report

Variant	rs6799647
Chromosome Location	chr3:55826976-55826977
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13319885	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6777324	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7628151	0.92[AFR][1000 genomes]
rs7649752	0.92[AFR][1000 genomes]
rs9813675	0.84[AFR][1000 genomes]
rs9813755	0.84[AFR][1000 genomes]
rs9855277	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876814	chr3:55802749-55860526	Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:55817200-55830600	Weak transcription	Pancreas	Pancrea
2	chr3:55825200-55830400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr3:55825200-55831000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:55825400-55829200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr3:55826000-55827000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr3:55826400-55830600	Weak transcription	Fetal Lung	lung
7	chr3:55826800-55827000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr3:55826800-55827000	Enhancers	Spleen	Spleen
9	chr3:55826800-55830800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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