Variant report

Variant	rs13319885
Chromosome Location	chr3:55830911-55830912
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13327002	0.86[AFR][1000 genomes]
rs6777324	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6799647	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7628151	0.95[AFR][1000 genomes]
rs7649752	0.95[AFR][1000 genomes]
rs9813675	0.97[AFR][1000 genomes]
rs9813755	0.97[AFR][1000 genomes]
rs9855277	0.95[AFR][1000 genomes]
rs9861193	0.81[AFR][1000 genomes]
rs9861210	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876814	chr3:55802749-55860526	Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:55825200-55831000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:55829200-55831600	Enhancers	Muscle Satellite Cultured Cells	--
3	chr3:55829600-55831200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr3:55830200-55831200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr3:55830400-55831200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:55830600-55831600	Enhancers	Fetal Lung	lung
7	chr3:55830800-55831000	Weak transcription	Pancreas	Pancrea
8	chr3:55830800-55831600	Enhancers	Fetal Kidney	kidney
9	chr3:55830800-55831800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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