Variant report

Variant	rs13327002
Chromosome Location	chr3:55830770-55830771
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13319885	0.86[AFR][1000 genomes]
rs7625795	0.85[AFR][1000 genomes]
rs7628151	0.81[AFR][1000 genomes]
rs7649752	0.81[AFR][1000 genomes]
rs9813529	0.87[AFR][1000 genomes]
rs9813675	0.83[AFR][1000 genomes]
rs9813755	0.83[AFR][1000 genomes]
rs9855277	0.81[AFR][1000 genomes]
rs9861193	0.95[AFR][1000 genomes]
rs9861210	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876814	chr3:55802749-55860526	Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:55825200-55831000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:55826800-55830800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr3:55829200-55831600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr3:55829600-55831200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr3:55830200-55830800	Enhancers	Fetal Stomach	stomach
6	chr3:55830200-55831200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:55830400-55830800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr3:55830400-55831200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:55830600-55830800	Enhancers	Pancreas	Pancrea
10	chr3:55830600-55831600	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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