Variant report

Variant	rs9861193
Chromosome Location	chr3:55846962-55846963
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13319885	0.81[AFR][1000 genomes]
rs13327002	0.95[AFR][1000 genomes]
rs7625795	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7628151	0.86[AFR][1000 genomes]
rs7649752	0.86[AFR][1000 genomes]
rs9813529	0.83[AFR][1000 genomes]
rs9855277	0.86[AFR][1000 genomes]
rs9861210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876814	chr3:55802749-55860526	Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv590361	chr3:55834871-55876104	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:55846000-55847600	Enhancers	Lung	lung
2	chr3:55846400-55848000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr3:55846800-55847000	Bivalent Enhancer	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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