Variant report

Variant	rs6801759
Chromosome Location	chr3:46585153-46585154
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:46584414..46585245-chr3:46599503..46600045,2	K562	blood:
2	chr3:46584242..46586784-chr3:46591194..46593105,2	K562	blood:
3	chr3:46575458..46577702-chr3:46584579..46586298,2	K562	blood:
4	chr3:46582873..46586773-chr3:46587066..46590997,5	K562	blood:
5	chr3:46582368..46586773-chr3:46586902..46591684,9	K562	blood:

Variant related genes	Relation type
ENSG00000264306	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11713015	0.81[ASN][1000 genomes]
rs1402152	0.81[ASN][1000 genomes]
rs1520493	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17078944	0.82[ASN][1000 genomes]
rs2373255	0.81[ASN][1000 genomes]
rs34667937	0.83[ASN][1000 genomes]
rs7428292	0.81[AFR][1000 genomes]
rs939421	0.94[CEU][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9848648	0.81[ASN][1000 genomes]
rs9849400	0.81[ASN][1000 genomes]
rs9883208	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013306	chr3:46469014-46698538	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv876737	chr3:46569721-46595431	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46544800-46599400	Weak transcription	Right Atrium	heart
2	chr3:46549200-46585400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:46556400-46591000	Weak transcription	Psoas Muscle	Psoas
4	chr3:46558400-46591000	Weak transcription	Gastric	stomach
5	chr3:46567200-46586000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr3:46571600-46587000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr3:46578400-46599200	Weak transcription	HSMMtube	muscle
8	chr3:46578800-46586200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr3:46579200-46587800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr3:46579800-46586200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr3:46580200-46586200	Weak transcription	Liver	Liver
12	chr3:46580600-46586200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr3:46580800-46586400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr3:46581200-46599200	Weak transcription	Fetal Heart	heart
15	chr3:46581400-46594400	Enhancers	Fetal Thymus	thymus
16	chr3:46581600-46586000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr3:46581600-46591000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr3:46581600-46599400	Weak transcription	Spleen	Spleen
19	chr3:46581800-46587200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr3:46581800-46587600	Enhancers	Dnd41	blood
21	chr3:46582400-46585200	Weak transcription	Right Ventricle	heart
22	chr3:46582400-46587200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr3:46583000-46588000	Strong transcription	Ovary	ovary
24	chr3:46583200-46590600	Weak transcription	Primary hematopoietic stem cells	blood
25	chr3:46583400-46587200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr3:46583600-46585600	Enhancers	Hela-S3	cervix
27	chr3:46583800-46585200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr3:46583800-46587200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr3:46584000-46587400	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr3:46584200-46587000	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr3:46584400-46587200	Weak transcription	Primary B cells from peripheral blood	blood
32	chr3:46584400-46587400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr3:46584400-46598000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr3:46584600-46585400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr3:46584600-46586400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr3:46584600-46586800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr3:46584600-46587200	Weak transcription	GM12878-XiMat	blood
38	chr3:46584600-46591000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr3:46584600-46591200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr3:46584800-46586000	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr3:46584800-46586000	Weak transcription	Thymus	Thymus
42	chr3:46584800-46586200	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr3:46584800-46586400	Strong transcription	Skeletal Muscle Female	skeletal muscle
44	chr3:46584800-46586400	Weak transcription	K562	blood
45	chr3:46584800-46586600	Weak transcription	Primary T cells from cord blood	blood
46	chr3:46584800-46587000	Strong transcription	Skeletal Muscle Male	skeletal muscle
47	chr3:46584800-46588400	Strong transcription	Left Ventricle	heart
48	chr3:46584800-46588600	Weak transcription	Osteobl	bone
49	chr3:46584800-46590400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr3:46584800-46590800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links